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Cow genome map

           
Conread name:
           
Pig3-SRG8014G04
        

               
Conread position:
               
215-384
               

               
Cow position:
               
chr29:11053882-11054048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
7, 123
               

               
Conread position:
               
215-450
               

               
Cow position:
               
chr29:2522543-2522318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
29, 14
               

               
Conread position:
               
217-609
               

               
Cow position:
               
chr29:18963704-18963318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
358, 64
               

               
Conread position:
               
217-623
               

               
Cow position:
               
chr29:43496023-43495637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 48
               

               
Conread position:
               
217-624
               

               
Cow position:
               
chr29:13639397-13639787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
412
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 129
               

               
Conread position:
               
220-458
               

               
Cow position:
               
chr29:356290-356058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
223-468
               

               
Cow position:
               
chr29:34359839-34360072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
223-624
               

               
Cow position:
               
chr29:28775492-28775888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 80
               

               
Conread position:
               
224-583
               

               
Cow position:
               
chr29:28868602-28868237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
225-430
               

               
Cow position:
               
chr29:16309708-16309510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
12, 107
               

               
Conread position:
               
226-390
               

               
Cow position:
               
chr29:44988824-44988982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
80, 35
               

               
Conread position:
               
226-393
               

               
Cow position:
               
chr29:41365077-41364906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
17, 126
               

               
Conread position:
               
226-416
               

               
Cow position:
               
chr29:39643140-39642950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
22, 124
               

               
Conread position:
               
226-428
               

               
Cow position:
               
chr29:1395559-1395368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
16, 105
               

               
Conread position:
               
226-453
               

               
Cow position:
               
chr29:26330172-26329955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
21, 14
               

               
Conread position:
               
226-564
               

               
Cow position:
               
chr29:28195548-28195893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 114
               

               
Conread position:
               
226-623
               

               
Cow position:
               
chr29:27858757-27858376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
17, 139
               

               
Conread position:
               
227-409
               

               
Cow position:
               
chr29:26654076-26654261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
228-386
               

               
Cow position:
               
chr29:26275570-26275417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
228-389
               

               
Cow position:
               
chr29:25092073-25091910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
14, 154
               

               
Conread position:
               
228-412
               

               
Cow position:
               
chr29:26986891-26986720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
20, 118
               

               
Conread position:
               
228-470
               

               
Cow position:
               
chr29:42364055-42364294 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
15, 152
               

               
Conread position:
               
229-459
               

               
Cow position:
               
chr29:40166202-40165973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 25
               

               
Conread position:
               
230-623
               

               
Cow position:
               
chr29:24624207-24623810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 83
               

               
Conread position:
               
231-621
               

               
Cow position:
               
chr29:45005671-45006047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
234-624
               

               
Cow position:
               
chr29:32290560-32290168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 113
               

               
Conread position:
               
239-416
               

               
Cow position:
               
chr29:868722-868546 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
62, 96
               

               
Conread position:
               
239-459
               

               
Cow position:
               
chr29:25333517-25333722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
125, 24
               

               
Conread position:
               
239-623
               

               
Cow position:
               
chr29:19428606-19428234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 104
               

               
Conread position:
               
239-624
               

               
Cow position:
               
chr29:17409282-17408898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
394
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 98
               

               
Conread position:
               
239-625
               

               
Cow position:
               
chr29:16065901-16065507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
67, 172
               

               
Conread position:
               
240-341
               

               
Cow position:
               
chr29:29314709-29314810 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
102
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
240-370
               

               
Cow position:
               
chr29:10235187-10235310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
240-446
               

               
Cow position:
               
chr29:23113629-23113423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
66, 103
               

               
Conread position:
               
240-447
               

               
Cow position:
               
chr29:18021736-18021932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
75, 10
               

               
Conread position:
               
240-471
               

               
Cow position:
               
chr29:14097181-14097413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
240-547
               

               
Cow position:
               
chr29:12798865-12798575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
240-558
               

               
Cow position:
               
chr29:38581922-38581601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
66, 174
               

               
Conread position:
               
240-584
               

               
Cow position:
               
chr29:16175325-16175664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 86
               

               
Conread position:
               
240-604
               

               
Cow position:
               
chr29:8125645-8126008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
323, 178
               

               
Conread position:
               
240-614
               

               
Cow position:
               
chr29:26017556-26017934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 164
               

               
Conread position:
               
240-617
               

               
Cow position:
               
chr29:36217063-36216692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
240-624
               

               
Cow position:
               
chr29:1933608-1933994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 104
               

               
Conread position:
               
241-486
               

               
Cow position:
               
chr29:21000588-21000346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
242-343
               

               
Cow position:
               
chr29:31674572-31674473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
102
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
242-362
               

               
Cow position:
               
chr29:44682155-44682273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
242-380
               

               
Cow position:
               
chr29:30188395-30188531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
59, 92
               

               
Conread position:
               
242-389
               

               
Cow position:
               
chr29:3100313-3100461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
242-389
               

               
Cow position:
               
chr29:10818491-10818636 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
242-391
               

               
Cow position:
               
chr29:15809759-15809609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
242-393
               

               
Cow position:
               
chr29:26501452-26501302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
64, 82
               

               
Conread position:
               
242-404
               

               
Cow position:
               
chr29:30440875-30440711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
55, 91
               

               
Conread position:
               
242-412
               

               
Cow position:
               
chr29:6286214-6286380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
59, 97
               

               
Conread position:
               
242-415
               

               
Cow position:
               
chr29:3711334-3711161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
242-421
               

               
Cow position:
               
chr29:19253876-19254054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
60, 101
               

               
Conread position:
               
242-424
               

               
Cow position:
               
chr29:42886331-42886146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
242-425
               

               
Cow position:
               
chr29:24103601-24103784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
242-426
               

               
Cow position:
               
chr29:34773790-34773964 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
242-427
               

               
Cow position:
               
chr29:22714780-22714965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
242-427
               

               
Cow position:
               
chr29:22778233-22778422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
242-437
               

               
Cow position:
               
chr29:44378471-44378665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
58, 107
               

               
Conread position:
               
242-439
               

               
Cow position:
               
chr29:20903343-20903537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
242-439
               

               
Cow position:
               
chr29:23984014-23984213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
242-440
               

               
Cow position:
               
chr29:25737474-25737667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
186, 103
               

               
Conread position:
               
242-441
               

               
Cow position:
               
chr29:11787740-11787541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
162, 143
               

               
Conread position:
               
242-442
               

               
Cow position:
               
chr29:26726113-26725912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
242-451
               

               
Cow position:
               
chr29:9139357-9139147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
59, 97
               

               
Conread position:
               
242-454
               

               
Cow position:
               
chr29:4691734-4691950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
85, 59
               

               
Conread position:
               
242-458
               

               
Cow position:
               
chr29:12680102-12679888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 0
               

               
Conread position:
               
242-458
               

               
Cow position:
               
chr29:22175631-22175425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
118, 67
               

               
Conread position:
               
242-459
               

               
Cow position:
               
chr29:2984832-2984618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
65, 104
               

               
Conread position:
               
242-459
               

               
Cow position:
               
chr29:19338931-19338710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
73, 60
               

               
Conread position:
               
242-460
               

               
Cow position:
               
chr29:4066030-4065818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
202, 113
               

               
Conread position:
               
242-463
               

               
Cow position:
               
chr29:9195176-9195398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
64, 55
               

               
Conread position:
               
242-470
               

               
Cow position:
               
chr29:5063091-5062852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
41, 123
               

               
Conread position:
               
242-471
               

               
Cow position:
               
chr29:4043356-4043126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
242-484
               

               
Cow position:
               
chr29:1709862-1709625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
59, 82
               

               
Conread position:
               
242-490
               

               
Cow position:
               
chr29:28595999-28596247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
64, 102
               

               
Conread position:
               
242-495
               

               
Cow position:
               
chr29:2644359-2644613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
58, 134
               

               
Conread position:
               
242-499
               

               
Cow position:
               
chr29:10456615-10456861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
242-507
               

               
Cow position:
               
chr29:13372609-13372349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
101, 0
               

               
Conread position:
               
242-508
               

               
Cow position:
               
chr29:43195938-43195675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
64, 114
               

               
Conread position:
               
242-516
               

               
Cow position:
               
chr29:43311850-43312121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
242-534
               

               
Cow position:
               
chr29:29974987-29974700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
242-535
               

               
Cow position:
               
chr29:40583737-40583452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
242-568
               

               
Cow position:
               
chr29:26615778-26616114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
191, 103
               

               
Conread position:
               
242-569
               

               
Cow position:
               
chr29:43328584-43328259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
181, 107
               

               
Conread position:
               
242-570
               

               
Cow position:
               
chr29:24304523-24304194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 307
               

               
Conread position:
               
242-579
               

               
Cow position:
               
chr29:12451320-12450996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
31, 68
               

               
Conread position:
               
242-583
               

               
Cow position:
               
chr29:19125287-19124967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
119, 0
               

               
Conread position:
               
242-588
               

               
Cow position:
               
chr29:11397980-11398324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-40
               

               
Alignm gaps (pig, cow):
               
161, 60
               

               
Conread position:
               
242-589
               

               
Cow position:
               
chr29:35501708-35502045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
321, 12
               

               
Conread position:
               
242-604
               

               
Cow position:
               
chr29:17041594-17041236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 110
               

               
Conread position:
               
242-618
               

               
Cow position:
               
chr29:26778822-26778463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
242-619
               

               
Cow position:
               
chr29:38349183-38349557 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 101
               

               
Conread position:
               
242-620
               

               
Cow position:
               
chr29:17109912-17109542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
186, 102
               

               
Conread position:
               
242-621
               

               
Cow position:
               
chr29:40117514-40117123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 70
               

               
Conread position:
               
242-622
               

               
Cow position:
               
chr29:24952632-24952249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
332, 165
               

               
Conread position:
               
242-622
               

               
Cow position:
               
chr29:40013757-40014129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 110
               

               
Conread position:
               
242-623
               

               
Cow position:
               
chr29:26980343-26979969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
334, 221
               

               
Conread position:
               
242-624
               

               
Cow position:
               
chr29:18212049-18212427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 22
               

               
Conread position:
               
242-624
               

               
Cow position:
               
chr29:32963500-32963102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
204, 55
               

               
Conread position:
               
242-624
               

               
Cow position:
               
chr29:34745717-34746088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
82, 95
               

               
Conread position:
               
242-624
               

               
Cow position:
               
chr29:35292032-35291664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
259, 30
               

               
Conread position:
               
242-625
               

               
Cow position:
               
chr29:1479632-1479248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
242-625
               

               
Cow position:
               
chr29:2521531-2521144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
242-625
               

               
Cow position:
               
chr29:6878752-6879132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 207
               

               
Conread position:
               
242-625
               

               
Cow position:
               
chr29:13127966-13128352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
242-625
               

               
Cow position:
               
chr29:16382802-16382419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 169
               

               
Conread position:
               
242-625
               

               
Cow position:
               
chr29:17117876-17117497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
64, 87
               

               
Conread position:
               
242-625
               

               
Cow position:
               
chr29:20213742-20213358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
242-625
               

               
Cow position:
               
chr29:20593912-20593529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 154
               

               
Conread position:
               
242-625
               

               
Cow position:
               
chr29:31185556-31185173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 245
               

               
Conread position:
               
242-625
               

               
Cow position:
               
chr29:32318039-32317660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 50
               

               
Conread position:
               
242-625
               

               
Cow position:
               
chr29:36530809-36530429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
242-625
               

               
Cow position:
               
chr29:38261307-38261693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
242-625
               

               
Cow position:
               
chr29:38671910-38672295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
242-625
               

               
Cow position:
               
chr29:42808152-42807778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
63, 84
               

               
Conread position:
               
242-625
               

               
Cow position:
               
chr29:45582869-45583240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
64, 102
               

               
Conread position:
               
242-625
               

               
Cow position:
               
chr29:45650399-45650763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 115
               

               
Conread position:
               
243-367
               

               
Cow position:
               
chr29:27588864-27588743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
118, 11
               

               
Conread position:
               
243-370
               

               
Cow position:
               
chr29:23243937-23244064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
243-451
               

               
Cow position:
               
chr29:22613369-22613174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
243-468
               

               
Cow position:
               
chr29:39111372-39111586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
243-528
               

               
Cow position:
               
chr29:9709638-9709361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
244-528
               

               
Cow position:
               
chr29:17773888-17773603 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 231
               

               
Conread position:
               
244-625
               

               
Cow position:
               
chr29:14611425-14611043 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 231
               

               
Conread position:
               
244-625
               

               
Cow position:
               
chr29:38410376-38409994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
245-402
               

               
Cow position:
               
chr29:6337602-6337450 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
61, 91
               

               
Conread position:
               
245-406
               

               
Cow position:
               
chr29:31489262-31489103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
245-410
               

               
Cow position:
               
chr29:14034384-14034547 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
44, 58
               

               
Conread position:
               
245-427
               

               
Cow position:
               
chr29:4520276-4520098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
245-430
               

               
Cow position:
               
chr29:10659397-10659588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
245-430
               

               
Cow position:
               
chr29:25474861-25474667 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
245-431
               

               
Cow position:
               
chr29:32767582-32767762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
57, 87
               

               
Conread position:
               
245-443
               

               
Cow position:
               
chr29:23697920-23697723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
56, 86
               

               
Conread position:
               
245-446
               

               
Cow position:
               
chr29:44135519-44135717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
36, 58
               

               
Conread position:
               
245-448
               

               
Cow position:
               
chr29:4194176-4194379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
52, 81
               

               
Conread position:
               
245-450
               

               
Cow position:
               
chr29:4805173-4804973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
62, 26
               

               
Conread position:
               
245-455
               

               
Cow position:
               
chr29:41530788-41530585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
77, 57
               

               
Conread position:
               
245-456
               

               
Cow position:
               
chr29:22068805-22069013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
55, 83
               

               
Conread position:
               
245-457
               

               
Cow position:
               
chr29:29769410-29769613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
245-471
               

               
Cow position:
               
chr29:3502993-3502778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
201, 57
               

               
Conread position:
               
245-481
               

               
Cow position:
               
chr29:3396047-3395822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
245-486
               

               
Cow position:
               
chr29:45589650-45589881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
57, 18
               

               
Conread position:
               
245-565
               

               
Cow position:
               
chr29:35485189-35484870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 89
               

               
Conread position:
               
245-591
               

               
Cow position:
               
chr29:20673858-20674209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 105
               

               
Conread position:
               
245-616
               

               
Cow position:
               
chr29:35281438-35281077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 99
               

               
Conread position:
               
245-617
               

               
Cow position:
               
chr29:39567628-39567261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 100
               

               
Conread position:
               
245-623
               

               
Cow position:
               
chr29:6925953-6925585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
275, 88
               

               
Conread position:
               
245-623
               

               
Cow position:
               
chr29:21933173-21933566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 18
               

               
Conread position:
               
245-624
               

               
Cow position:
               
chr29:4120789-4120419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
385
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 105
               

               
Conread position:
               
245-624
               

               
Cow position:
               
chr29:16609683-16609306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 147
               

               
Conread position:
               
246-429
               

               
Cow position:
               
chr29:26985168-26984989 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
246-488
               

               
Cow position:
               
chr29:603377-603608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
34, 17
               

               
Conread position:
               
246-508
               

               
Cow position:
               
chr29:16657630-16657373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
61, 135
               

               
Conread position:
               
246-620
               

               
Cow position:
               
chr29:26334448-26334815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
246-625
               

               
Cow position:
               
chr29:12004821-12005200 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 97
               

               
Conread position:
               
247-405
               

               
Cow position:
               
chr29:14484605-14484761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
60, 100
               

               
Conread position:
               
247-410
               

               
Cow position:
               
chr29:5109265-5109431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
247-426
               

               
Cow position:
               
chr29:36183220-36183039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
69, 92
               

               
Conread position:
               
247-437
               

               
Cow position:
               
chr29:3502506-3502309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
97, 55
               

               
Conread position:
               
247-450
               

               
Cow position:
               
chr29:19389426-19389226 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
54, 96
               

               
Conread position:
               
247-455
               

               
Cow position:
               
chr29:41747383-41747179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
58, 93
               

               
Conread position:
               
247-487
               

               
Cow position:
               
chr29:699677-699907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
55, 91
               

               
Conread position:
               
247-517
               

               
Cow position:
               
chr29:36037641-36037385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
55, 96
               

               
Conread position:
               
247-552
               

               
Cow position:
               
chr29:37785230-37785548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
247-586
               

               
Cow position:
               
chr29:26519522-26519856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
56, 110
               

               
Conread position:
               
247-623
               

               
Cow position:
               
chr29:11696469-11696101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
175, 82
               

               
Conread position:
               
247-624
               

               
Cow position:
               
chr29:2744333-2744705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
247-624
               

               
Cow position:
               
chr29:9638378-9638746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 83
               

               
Conread position:
               
247-624
               

               
Cow position:
               
chr29:13615698-13616088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
53, 100
               

               
Conread position:
               
248-502
               

               
Cow position:
               
chr29:44310088-44310340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
53, 111
               

               
Conread position:
               
249-380
               

               
Cow position:
               
chr29:32211119-32211250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
249-407
               

               
Cow position:
               
chr29:28446319-28446477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
249-412
               

               
Cow position:
               
chr29:14615320-14615482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
52, 92
               

               
Conread position:
               
250-378
               

               
Cow position:
               
chr29:4334664-4334539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
51, 111
               

               
Conread position:
               
250-378
               

               
Cow position:
               
chr29:39329658-39329786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
250-384
               

               
Cow position:
               
chr29:28979545-28979674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
51, 79
               

               
Conread position:
               
250-405
               

               
Cow position:
               
chr29:28166277-28166433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
250-624
               

               
Cow position:
               
chr29:15944509-15944138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 93
               

               
Conread position:
               
253-623
               

               
Cow position:
               
chr29:24345517-24345898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
382
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 0
               

               
Conread position:
               
254-441
               

               
Cow position:
               
chr29:11562547-11562363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
254-467
               

               
Cow position:
               
chr29:35636362-35636147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
42, 95
               

               
Conread position:
               
254-625
               

               
Cow position:
               
chr29:4480240-4480609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
198, 163
               

               
Conread position:
               
255-472
               

               
Cow position:
               
chr29:17135777-17135569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
85, 0
               

               
Conread position:
               
258-415
               

               
Cow position:
               
chr29:38580905-38580752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
258-451
               

               
Cow position:
               
chr29:29475325-29475508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
258-625
               

               
Cow position:
               
chr29:44901776-44902137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 76
               

               
Conread position:
               
259-624
               

               
Cow position:
               
chr29:36632914-36633268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
5, 28
               

               
Conread position:
               
260-358
               

               
Cow position:
               
chr29:24252164-24252066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
99
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
260-450
               

               
Cow position:
               
chr29:5098834-5099022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
73, 0
               

               
Conread position:
               
260-623
               

               
Cow position:
               
chr29:26285109-26285461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
260-624
               

               
Cow position:
               
chr29:20933638-20933272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 246
               

               
Conread position:
               
263-623
               

               
Cow position:
               
chr29:4874970-4875338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
263-623
               

               
Cow position:
               
chr29:18748658-18749014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 160
               

               
Conread position:
               
264-429
               

               
Cow position:
               
chr29:34744694-34744855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
38, 82
               

               
Conread position:
               
264-623
               

               
Cow position:
               
chr29:17182-17525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
264-623
               

               
Cow position:
               
chr29:19762198-19761842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
185, 0
               

               
Conread position:
               
267-623
               

               
Cow position:
               
chr29:19756366-19756014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
307, 64
               

               
Conread position:
               
270-451
               

               
Cow position:
               
chr29:27009338-27009157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
0, 0
               
Show alignments to all cow chromosomes.