Cow genome map

Conread name: Pla1-C0000030_A15

Conread position: 32-148
Cow position: chr15:8046538-8046654 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 90
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 42-160
Cow position: chr15:47201543-47201426 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 96
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 108, 0

Conread position: 141-407
Cow position: chr15:13641157-13641423 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 151

Conread position: 141-464
Cow position: chr15:13076590-13076916 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 12

Conread position: 141-464
Cow position: chr15:18214633-18214960 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 156

Conread position: 143-320
Cow position: chr15:29007274-29007099 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 136
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 22, 9

Conread position: 143-463
Cow position: chr15:25165032-25164713 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 61

Conread position: 143-463
Cow position: chr15:36940311-36939992 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 61

Conread position: 143-464
Cow position: chr15:60689-61014 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 61

Conread position: 144-320
Cow position: chr15:6488840-6489015 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 131
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 19, 88

Conread position: 144-463
Cow position: chr15:12442598-12442917 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 60

Conread position: 148-464
Cow position: chr15:17193481-17193166 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 55

Conread position: 153-400
Cow position: chr15:4953403-4953647 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 185
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 10, 49

Conread position: 153-463
Cow position: chr15:25203890-25203581 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 51

Conread position: 160-461
Cow position: chr15:45292408-45292705 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 43

Conread position: 160-462
Cow position: chr15:2644258-2643958 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 0

Conread position: 160-464
Cow position: chr15:8576239-8576544 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 43

Conread position: 161-282
Cow position: chr15:20647255-20647375 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 42, 0

Conread position: 161-298
Cow position: chr15:33335555-33335690 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 107
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 42, 0

Conread position: 161-299
Cow position: chr15:3276387-3276251 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 111
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 42, 0

Conread position: 161-310
Cow position: chr15:3272808-3272662 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 110
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 42, 0

Conread position: 161-318
Cow position: chr15:6367399-6367244 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 122
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 64, 42

Conread position: 161-336
Cow position: chr15:4629155-4628976 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 136
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 42, 134

Conread position: 161-366
Cow position: chr15:8001473-8001273 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 160
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 64, 42

Conread position: 161-374
Cow position: chr15:39407183-39406966 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 135

Conread position: 161-418
Cow position: chr15:4918197-4918455 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 194
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 71

Conread position: 161-436
Cow position: chr15:42940001-42940272 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 0

Conread position: 161-437
Cow position: chr15:4689124-4689394 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 50

Conread position: 161-460
Cow position: chr15:43247895-43248177 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 209
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 68, 49

Conread position: 161-461
Cow position: chr15:6158275-6158569 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr15:29217-28918 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr15:442698-442399 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr15:481670-481954 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 221
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 64, 42

Conread position: 161-463
Cow position: chr15:5020453-5020751 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr15:6563983-6564293 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 42

Conread position: 161-463
Cow position: chr15:9620310-9620009 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 0

Conread position: 161-463
Cow position: chr15:11596291-11595991 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr15:20404592-20404292 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr15:25133053-25133353 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr15:31768459-31768160 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr15:49191475-49191175 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr15:50151790-50152091 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 42

Conread position: 161-463
Cow position: chr15:52208406-52208106 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-464
Cow position: chr15:609026-608738 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 39

Conread position: 161-464
Cow position: chr15:21533046-21532747 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 42

Conread position: 161-464
Cow position: chr15:26388878-26388578 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-464
Cow position: chr15:37382498-37382200 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 131

Conread position: 161-464
Cow position: chr15:42727465-42727763 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-464
Cow position: chr15:47201484-47201170 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 42

Conread position: 161-464
Cow position: chr15:50344644-50344344 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 277, 129

Conread position: 162-463
Cow position: chr15:5640499-5640200 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 0

Conread position: 189-463
Cow position: chr15:4082102-4082375 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 0

Conread position: 189-463
Cow position: chr15:6959814-6960087 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 0

Conread position: 189-463
Cow position: chr15:21909290-21909019 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 236, 92

Conread position: 190-463
Cow position: chr15:28487024-28486752 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 13

Show alignments to all cow chromosomes.