Cow genome map

Conread name: Pla1-C0000030_A15

Conread position: 43-151
Cow position: chr2:42502445-42502553 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 87
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 43-156
Cow position: chr2:77281096-77281208 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 93
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 107, 0

Conread position: 43-160
Cow position: chr2:7370585-7370700 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 90, 0

Conread position: 43-163
Cow position: chr2:76984993-76984872 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 94
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 101, 0

Conread position: 135-316
Cow position: chr2:76560538-76560721 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 144
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 18, 130

Conread position: 141-463
Cow position: chr2:10608841-10608520 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 63

Conread position: 143-463
Cow position: chr2:8529628-8529947 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 61

Conread position: 143-463
Cow position: chr2:63890283-63889970 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 61

Conread position: 143-463
Cow position: chr2:67682741-67683060 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 61

Conread position: 153-329
Cow position: chr2:7506617-7506447 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 10, 51

Conread position: 153-374
Cow position: chr2:104777-104559 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 166
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 10, 49

Conread position: 153-464
Cow position: chr2:30380242-30380552 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 51

Conread position: 157-464
Cow position: chr2:45917798-45917491 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 46

Conread position: 160-464
Cow position: chr2:65930434-65930142 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 43

Conread position: 161-278
Cow position: chr2:31272725-31272609 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 92
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 42, 0

Conread position: 161-320
Cow position: chr2:36722025-36722176 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 119
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 42, 0

Conread position: 161-336
Cow position: chr2:59410780-59410607 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 133
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 42, 0

Conread position: 161-353
Cow position: chr2:9219939-9219751 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 146
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 170, 109

Conread position: 161-362
Cow position: chr2:62735145-62735344 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 163
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-373
Cow position: chr2:576532-576736 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 165
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 42, 0

Conread position: 161-374
Cow position: chr2:7905911-7906118 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 165
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 39, 102

Conread position: 161-374
Cow position: chr2:50431672-50431462 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-378
Cow position: chr2:11002456-11002663 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 173
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 42, 0

Conread position: 161-379
Cow position: chr2:5797829-5797612 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 0

Conread position: 161-388
Cow position: chr2:50565289-50565510 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 174
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 204, 42

Conread position: 161-406
Cow position: chr2:4804763-4804520 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 0

Conread position: 161-447
Cow position: chr2:2603637-2603922 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 0

Conread position: 161-454
Cow position: chr2:46265278-46265566 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 42

Conread position: 161-457
Cow position: chr2:18020937-18020643 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 161-457
Cow position: chr2:74469017-74468723 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-458
Cow position: chr2:9042684-9042389 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 50

Conread position: 161-458
Cow position: chr2:70915928-70916219 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 0

Conread position: 161-461
Cow position: chr2:48534016-48533718 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-462
Cow position: chr2:57938371-57938670 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr2:825977-825677 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr2:2212515-2212216 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 0

Conread position: 161-463
Cow position: chr2:4180141-4179842 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 42

Conread position: 161-463
Cow position: chr2:6945025-6945325 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr2:11813574-11813273 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 42

Conread position: 161-463
Cow position: chr2:14938646-14938946 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr2:17119102-17118803 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr2:22344994-22345294 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr2:24423053-24422754 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr2:37396356-37396656 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 242, 42

Conread position: 161-463
Cow position: chr2:44094341-44094640 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr2:48721710-48722010 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr2:53204151-53203849 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 43

Conread position: 161-463
Cow position: chr2:54148263-54148563 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr2:54740446-54740751 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 46

Conread position: 161-463
Cow position: chr2:55164330-55164031 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr2:60051493-60051193 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr2:62731500-62731800 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr2:62999795-62999495 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr2:77859296-77859594 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 42

Conread position: 161-463
Cow position: chr2:86508461-86508160 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 42

Conread position: 161-464
Cow position: chr2:12330900-12331208 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 219
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 135, 208

Conread position: 161-464
Cow position: chr2:16717927-16717632 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 42

Conread position: 161-464
Cow position: chr2:16752921-16752623 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 42

Conread position: 161-464
Cow position: chr2:32417655-32417356 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 48

Conread position: 161-464
Cow position: chr2:35194684-35194983 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-464
Cow position: chr2:37324860-37325160 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 42

Conread position: 161-464
Cow position: chr2:38335351-38335652 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-464
Cow position: chr2:41157154-41157446 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 42

Conread position: 161-464
Cow position: chr2:68191377-68191094 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 55

Conread position: 161-464
Cow position: chr2:85739335-85739643 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 136

Conread position: 162-464
Cow position: chr2:39107228-39107527 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 0

Conread position: 163-464
Cow position: chr2:209128-208828 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 40

Show alignments to all cow chromosomes.