Cow genome map
| Conread name: | Pla1-C0000030_A15 |
| Conread position: | 35-156 |
| Cow position: | chr3:8605623-8605503 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 37-156 |
| Cow position: | chr3:60932558-60932676 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 37-156 |
| Cow position: | chr3:61677827-61677947 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 42-148 |
| Cow position: | chr3:26993422-26993528 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 86 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 42-160 |
| Cow position: | chr3:81374954-81374837 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 43-463 |
| Cow position: | chr3:29573827-29573425 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 32 |
| Conread position: | 94-464 |
| Cow position: | chr3:3837319-3836950 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 34 |
| Conread position: | 141-392 |
| Cow position: | chr3:67021665-67021426 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 12 |
| Conread position: | 143-319 |
| Cow position: | chr3:30334151-30334326 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 20, 10 |
| Conread position: | 143-463 |
| Cow position: | chr3:42186806-42187125 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 61 |
| Conread position: | 147-374 |
| Cow position: | chr3:16293574-16293348 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 16, 6 |
| Conread position: | 147-464 |
| Cow position: | chr3:37600073-37600389 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 6 |
| Conread position: | 153-463 |
| Cow position: | chr3:5474887-5475196 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 51 |
| Conread position: | 153-463 |
| Cow position: | chr3:49907685-49907378 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 51 |
| Conread position: | 154-408 |
| Cow position: | chr3:77697133-77696881 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 160-464 |
| Cow position: | chr3:12872464-12872762 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 41 |
| Conread position: | 160-464 |
| Cow position: | chr3:18761826-18762125 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 41 |
| Conread position: | 161-279 |
| Cow position: | chr3:69779847-69779964 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 161-317 |
| Cow position: | chr3:11334508-11334353 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 78, 42 |
| Conread position: | 161-317 |
| Cow position: | chr3:11446790-11446953 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 63, 42 |
| Conread position: | 161-323 |
| Cow position: | chr3:72669203-72669044 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-329 |
| Cow position: | chr3:29130449-29130612 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-331 |
| Cow position: | chr3:49999492-49999660 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 77, 42 |
| Conread position: | 161-338 |
| Cow position: | chr3:42424144-42423971 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 161-343 |
| Cow position: | chr3:822733-822553 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 152 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-372 |
| Cow position: | chr3:40004154-40003944 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 166 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 161-400 |
| Cow position: | chr3:36571079-36570839 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 42 |
| Conread position: | 161-405 |
| Cow position: | chr3:47986796-47987037 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-421 |
| Cow position: | chr3:64654025-64654280 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-457 |
| Cow position: | chr3:7155450-7155156 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-459 |
| Cow position: | chr3:29282116-29282406 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 42 |
| Conread position: | 161-460 |
| Cow position: | chr3:16620399-16620100 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 131 |
| Conread position: | 161-460 |
| Cow position: | chr3:29311500-29311799 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 42 |
| Conread position: | 161-461 |
| Cow position: | chr3:58950816-58951113 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 251, 40 |
| Conread position: | 161-461 |
| Cow position: | chr3:72390274-72390573 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 42 |
| Conread position: | 161-461 |
| Cow position: | chr3:83761982-83761683 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 42 |
| Conread position: | 161-462 |
| Cow position: | chr3:16332776-16333072 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 114 |
| Conread position: | 161-462 |
| Cow position: | chr3:42507857-42507558 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-462 |
| Cow position: | chr3:53879910-53879610 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 42 |
| Conread position: | 161-462 |
| Cow position: | chr3:66968523-66968223 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 42 |
| Conread position: | 161-463 |
| Cow position: | chr3:302578-302878 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-463 |
| Cow position: | chr3:2075137-2075437 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-463 |
| Cow position: | chr3:3372828-3372530 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-463 |
| Cow position: | chr3:6785673-6785970 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-463 |
| Cow position: | chr3:6838386-6838689 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 42 |
| Conread position: | 161-463 |
| Cow position: | chr3:12797705-12797405 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 42 |
| Conread position: | 161-463 |
| Cow position: | chr3:14212747-14213047 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-463 |
| Cow position: | chr3:16226231-16226531 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-463 |
| Cow position: | chr3:18862797-18863094 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-463 |
| Cow position: | chr3:18875325-18875027 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-463 |
| Cow position: | chr3:19958951-19959251 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-463 |
| Cow position: | chr3:21593639-21593938 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-463 |
| Cow position: | chr3:30615584-30615285 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 42 |
| Conread position: | 161-463 |
| Cow position: | chr3:31022036-31022329 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-463 |
| Cow position: | chr3:36861747-36861450 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-463 |
| Cow position: | chr3:37894188-37894490 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 42 |
| Conread position: | 161-463 |
| Cow position: | chr3:37972385-37972683 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-463 |
| Cow position: | chr3:39921589-39921291 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-463 |
| Cow position: | chr3:40520583-40520283 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-463 |
| Cow position: | chr3:41018954-41018654 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-463 |
| Cow position: | chr3:41207209-41206909 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 42 |
| Conread position: | 161-463 |
| Cow position: | chr3:44927170-44927470 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-463 |
| Cow position: | chr3:45097596-45097896 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-463 |
| Cow position: | chr3:45947169-45946869 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-463 |
| Cow position: | chr3:46683190-46683490 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 19 |
| Conread position: | 161-463 |
| Cow position: | chr3:47078256-47077956 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-463 |
| Cow position: | chr3:51256295-51256595 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-463 |
| Cow position: | chr3:53934667-53934951 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-463 |
| Cow position: | chr3:61677891-61678190 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 65 |
| Conread position: | 161-463 |
| Cow position: | chr3:65178727-65179030 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 42 |
| Conread position: | 161-463 |
| Cow position: | chr3:65536471-65536771 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-463 |
| Cow position: | chr3:66887841-66887536 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 42 |
| Conread position: | 161-463 |
| Cow position: | chr3:68889216-68888916 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-463 |
| Cow position: | chr3:72174949-72174642 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 42 |
| Conread position: | 161-463 |
| Cow position: | chr3:78520404-78520702 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 42 |
| Conread position: | 161-464 |
| Cow position: | chr3:2507285-2506990 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 161-464 |
| Cow position: | chr3:13085184-13084884 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 42 |
| Conread position: | 161-464 |
| Cow position: | chr3:23735916-23735613 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 112 |
| Conread position: | 161-464 |
| Cow position: | chr3:35884764-35884464 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 96 |
| Conread position: | 161-464 |
| Cow position: | chr3:49649574-49649871 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 42 |
| Conread position: | 161-464 |
| Cow position: | chr3:61242739-61243036 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 42 |
| Conread position: | 163-463 |
| Cow position: | chr3:24265557-24265854 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 176-464 |
| Cow position: | chr3:47469024-47468742 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 51, 42 |
| Conread position: | 190-461 |
| Cow position: | chr3:80759596-80759863 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 64 |
Show alignments to all cow chromosomes.