Cow genome map

Conread name: Pla1-C0000030_A15

Conread position: 35-156
Cow position: chr3:8605623-8605503 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 115, 0

Conread position: 37-156
Cow position: chr3:60932558-60932676 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 94
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 113, 0

Conread position: 37-156
Cow position: chr3:61677827-61677947 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 94
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 111, 0

Conread position: 42-148
Cow position: chr3:26993422-26993528 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 86
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 42-160
Cow position: chr3:81374954-81374837 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 111, 0

Conread position: 43-463
Cow position: chr3:29573827-29573425 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 32

Conread position: 94-464
Cow position: chr3:3837319-3836950 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 34

Conread position: 141-392
Cow position: chr3:67021665-67021426 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 12

Conread position: 143-319
Cow position: chr3:30334151-30334326 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 136
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 20, 10

Conread position: 143-463
Cow position: chr3:42186806-42187125 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 61

Conread position: 147-374
Cow position: chr3:16293574-16293348 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 171
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 16, 6

Conread position: 147-464
Cow position: chr3:37600073-37600389 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 6

Conread position: 153-463
Cow position: chr3:5474887-5475196 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 51

Conread position: 153-463
Cow position: chr3:49907685-49907378 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 51

Conread position: 154-408
Cow position: chr3:77697133-77696881 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 160-464
Cow position: chr3:12872464-12872762 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 41

Conread position: 160-464
Cow position: chr3:18761826-18762125 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 41

Conread position: 161-279
Cow position: chr3:69779847-69779964 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 93
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 50, 0

Conread position: 161-317
Cow position: chr3:11334508-11334353 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 127
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 78, 42

Conread position: 161-317
Cow position: chr3:11446790-11446953 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 128
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 63, 42

Conread position: 161-323
Cow position: chr3:72669203-72669044 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 135
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 42, 0

Conread position: 161-329
Cow position: chr3:29130449-29130612 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 136
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 42, 0

Conread position: 161-331
Cow position: chr3:49999492-49999660 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 142
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 77, 42

Conread position: 161-338
Cow position: chr3:42424144-42423971 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 131
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 57, 0

Conread position: 161-343
Cow position: chr3:822733-822553 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 152
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-372
Cow position: chr3:40004154-40003944 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 166
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 0

Conread position: 161-400
Cow position: chr3:36571079-36570839 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 42

Conread position: 161-405
Cow position: chr3:47986796-47987037 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-421
Cow position: chr3:64654025-64654280 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-457
Cow position: chr3:7155450-7155156 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-459
Cow position: chr3:29282116-29282406 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 42

Conread position: 161-460
Cow position: chr3:16620399-16620100 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 131

Conread position: 161-460
Cow position: chr3:29311500-29311799 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 42

Conread position: 161-461
Cow position: chr3:58950816-58951113 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 251, 40

Conread position: 161-461
Cow position: chr3:72390274-72390573 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 42

Conread position: 161-461
Cow position: chr3:83761982-83761683 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 42

Conread position: 161-462
Cow position: chr3:16332776-16333072 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 114

Conread position: 161-462
Cow position: chr3:42507857-42507558 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-462
Cow position: chr3:53879910-53879610 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 42

Conread position: 161-462
Cow position: chr3:66968523-66968223 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 42

Conread position: 161-463
Cow position: chr3:302578-302878 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr3:2075137-2075437 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr3:3372828-3372530 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr3:6785673-6785970 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr3:6838386-6838689 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 42

Conread position: 161-463
Cow position: chr3:12797705-12797405 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 42

Conread position: 161-463
Cow position: chr3:14212747-14213047 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr3:16226231-16226531 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr3:18862797-18863094 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr3:18875325-18875027 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr3:19958951-19959251 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr3:21593639-21593938 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr3:30615584-30615285 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 269, 42

Conread position: 161-463
Cow position: chr3:31022036-31022329 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr3:36861747-36861450 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr3:37894188-37894490 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 271, 42

Conread position: 161-463
Cow position: chr3:37972385-37972683 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr3:39921589-39921291 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr3:40520583-40520283 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr3:41018954-41018654 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr3:41207209-41206909 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 42

Conread position: 161-463
Cow position: chr3:44927170-44927470 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr3:45097596-45097896 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr3:45947169-45946869 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr3:46683190-46683490 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 19

Conread position: 161-463
Cow position: chr3:47078256-47077956 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr3:51256295-51256595 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr3:53934667-53934951 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr3:61677891-61678190 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 65

Conread position: 161-463
Cow position: chr3:65178727-65179030 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 42

Conread position: 161-463
Cow position: chr3:65536471-65536771 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr3:66887841-66887536 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 42

Conread position: 161-463
Cow position: chr3:68889216-68888916 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr3:72174949-72174642 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 42

Conread position: 161-463
Cow position: chr3:78520404-78520702 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 42

Conread position: 161-464
Cow position: chr3:2507285-2506990 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 0

Conread position: 161-464
Cow position: chr3:13085184-13084884 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 42

Conread position: 161-464
Cow position: chr3:23735916-23735613 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 112

Conread position: 161-464
Cow position: chr3:35884764-35884464 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 96

Conread position: 161-464
Cow position: chr3:49649574-49649871 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 228, 42

Conread position: 161-464
Cow position: chr3:61242739-61243036 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 42

Conread position: 163-463
Cow position: chr3:24265557-24265854 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 0

Conread position: 176-464
Cow position: chr3:47469024-47468742 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 187
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 51, 42

Conread position: 190-461
Cow position: chr3:80759596-80759863 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 64

Show alignments to all cow chromosomes.