Cow genome map

Conread name: Pla1-C0000030_A15

Conread position: 35-149
Cow position: chr5:34637634-34637749 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 91
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 9, 0

Conread position: 37-153
Cow position: chr5:36406353-36406470 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 92
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 6, 0

Conread position: 43-160
Cow position: chr5:54868420-54868536 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 97
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 107, 0

Conread position: 132-463
Cow position: chr5:53854934-53855246 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 89

Conread position: 137-463
Cow position: chr5:443075-442747 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 70

Conread position: 141-463
Cow position: chr5:56931649-56931329 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 0

Conread position: 143-340
Cow position: chr5:23353984-23354183 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 157
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 147, 60

Conread position: 143-464
Cow position: chr5:12133836-12134156 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 61

Conread position: 150-464
Cow position: chr5:31634686-31634987 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 69

Conread position: 153-322
Cow position: chr5:10066297-10066129 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 137
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 10, 51

Conread position: 153-463
Cow position: chr5:38662978-38663283 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 51

Conread position: 153-463
Cow position: chr5:72857128-72857438 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 51

Conread position: 161-315
Cow position: chr5:29763169-29763321 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 122
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 42, 0

Conread position: 161-319
Cow position: chr5:18667569-18667725 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 127
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 42, 0

Conread position: 161-320
Cow position: chr5:51684355-51684201 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 123
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 42, 0

Conread position: 161-323
Cow position: chr5:26073526-26073366 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 124
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 64, 42

Conread position: 161-363
Cow position: chr5:17425888-17425687 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 150
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 130, 0

Conread position: 161-363
Cow position: chr5:20408799-20408598 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 151
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 130, 0

Conread position: 161-406
Cow position: chr5:5787068-5786824 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 42

Conread position: 161-436
Cow position: chr5:7140838-7140566 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 134

Conread position: 161-459
Cow position: chr5:28223701-28223995 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 132

Conread position: 161-463
Cow position: chr5:2977047-2977349 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 42

Conread position: 161-463
Cow position: chr5:4963124-4962825 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr5:5106485-5106784 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr5:10479384-10479082 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 133

Conread position: 161-463
Cow position: chr5:11835200-11834900 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr5:18118713-18118413 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr5:20107768-20107470 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr5:23882068-23881769 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr5:29255952-29255652 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr5:31285119-31285419 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr5:31709562-31709853 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr5:36369730-36369430 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 0

Conread position: 161-463
Cow position: chr5:37380348-37380646 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr5:38883426-38883127 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr5:39363134-39363434 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr5:45179585-45179287 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr5:46779777-46780072 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 12

Conread position: 161-463
Cow position: chr5:46816841-46816542 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr5:47565055-47564755 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr5:47565523-47565223 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr5:47590332-47590033 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr5:54927660-54927364 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 0

Conread position: 161-463
Cow position: chr5:54929988-54929692 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 0

Conread position: 161-463
Cow position: chr5:54951860-54951555 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 42

Conread position: 161-463
Cow position: chr5:55722791-55723091 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr5:57986757-57987054 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr5:58192177-58192477 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-463
Cow position: chr5:59064705-59065005 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 0

Conread position: 161-463
Cow position: chr5:75754862-75754562 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-464
Cow position: chr5:10542414-10542115 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 161-464
Cow position: chr5:47343135-47343437 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 42

Conread position: 161-464
Cow position: chr5:60519425-60519122 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 208
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 238, 130

Conread position: 161-464
Cow position: chr5:70593740-70593440 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 162-445
Cow position: chr5:36410177-36409896 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 0

Conread position: 162-463
Cow position: chr5:51746481-51746780 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 0

Conread position: 163-464
Cow position: chr5:18250311-18250610 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 0

Conread position: 166-464
Cow position: chr5:31097552-31097264 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 7

Conread position: 190-460
Cow position: chr5:63648201-63647933 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 13

Show alignments to all cow chromosomes.