Cow genome map
Conread name: | Pla1-C0000030_A15 |
Conread position: | 35-149 |
Cow position: | chr5:34637634-34637749 (view UCSC Genome Browser custom track) |
Alignm length: | 116 |
Alignm identity: | 91 |
Alignm E-value: | 3e-21 |
Alignm gaps (pig, cow): | 9, 0 |
Conread position: | 37-153 |
Cow position: | chr5:36406353-36406470 (view UCSC Genome Browser custom track) |
Alignm length: | 118 |
Alignm identity: | 92 |
Alignm E-value: | 3e-21 |
Alignm gaps (pig, cow): | 6, 0 |
Conread position: | 43-160 |
Cow position: | chr5:54868420-54868536 (view UCSC Genome Browser custom track) |
Alignm length: | 118 |
Alignm identity: | 97 |
Alignm E-value: | 5e-26 |
Alignm gaps (pig, cow): | 107, 0 |
Conread position: | 132-463 |
Cow position: | chr5:53854934-53855246 (view UCSC Genome Browser custom track) |
Alignm length: | 335 |
Alignm identity: | 252 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 31, 89 |
Conread position: | 137-463 |
Cow position: | chr5:443075-442747 (view UCSC Genome Browser custom track) |
Alignm length: | 332 |
Alignm identity: | 269 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 16, 70 |
Conread position: | 141-463 |
Cow position: | chr5:56931649-56931329 (view UCSC Genome Browser custom track) |
Alignm length: | 323 |
Alignm identity: | 257 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 62, 0 |
Conread position: | 143-340 |
Cow position: | chr5:23353984-23354183 (view UCSC Genome Browser custom track) |
Alignm length: | 201 |
Alignm identity: | 157 |
Alignm E-value: | 9.99967e-42 |
Alignm gaps (pig, cow): | 147, 60 |
Conread position: | 143-464 |
Cow position: | chr5:12133836-12134156 (view UCSC Genome Browser custom track) |
Alignm length: | 323 |
Alignm identity: | 266 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 61 |
Conread position: | 150-464 |
Cow position: | chr5:31634686-31634987 (view UCSC Genome Browser custom track) |
Alignm length: | 316 |
Alignm identity: | 231 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 13, 69 |
Conread position: | 153-322 |
Cow position: | chr5:10066297-10066129 (view UCSC Genome Browser custom track) |
Alignm length: | 171 |
Alignm identity: | 137 |
Alignm E-value: | 6e-37 |
Alignm gaps (pig, cow): | 10, 51 |
Conread position: | 153-463 |
Cow position: | chr5:38662978-38663283 (view UCSC Genome Browser custom track) |
Alignm length: | 312 |
Alignm identity: | 250 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 10, 51 |
Conread position: | 153-463 |
Cow position: | chr5:72857128-72857438 (view UCSC Genome Browser custom track) |
Alignm length: | 313 |
Alignm identity: | 257 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 10, 51 |
Conread position: | 161-315 |
Cow position: | chr5:29763169-29763321 (view UCSC Genome Browser custom track) |
Alignm length: | 155 |
Alignm identity: | 122 |
Alignm E-value: | 3e-31 |
Alignm gaps (pig, cow): | 42, 0 |
Conread position: | 161-319 |
Cow position: | chr5:18667569-18667725 (view UCSC Genome Browser custom track) |
Alignm length: | 159 |
Alignm identity: | 127 |
Alignm E-value: | 4e-34 |
Alignm gaps (pig, cow): | 42, 0 |
Conread position: | 161-320 |
Cow position: | chr5:51684355-51684201 (view UCSC Genome Browser custom track) |
Alignm length: | 160 |
Alignm identity: | 123 |
Alignm E-value: | 7e-28 |
Alignm gaps (pig, cow): | 42, 0 |
Conread position: | 161-323 |
Cow position: | chr5:26073526-26073366 (view UCSC Genome Browser custom track) |
Alignm length: | 164 |
Alignm identity: | 124 |
Alignm E-value: | 6e-27 |
Alignm gaps (pig, cow): | 64, 42 |
Conread position: | 161-363 |
Cow position: | chr5:17425888-17425687 (view UCSC Genome Browser custom track) |
Alignm length: | 203 |
Alignm identity: | 150 |
Alignm E-value: | 5e-36 |
Alignm gaps (pig, cow): | 130, 0 |
Conread position: | 161-363 |
Cow position: | chr5:20408799-20408598 (view UCSC Genome Browser custom track) |
Alignm length: | 203 |
Alignm identity: | 151 |
Alignm E-value: | 6e-37 |
Alignm gaps (pig, cow): | 130, 0 |
Conread position: | 161-406 |
Cow position: | chr5:5787068-5786824 (view UCSC Genome Browser custom track) |
Alignm length: | 248 |
Alignm identity: | 190 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 73, 42 |
Conread position: | 161-436 |
Cow position: | chr5:7140838-7140566 (view UCSC Genome Browser custom track) |
Alignm length: | 280 |
Alignm identity: | 223 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 40, 134 |
Conread position: | 161-459 |
Cow position: | chr5:28223701-28223995 (view UCSC Genome Browser custom track) |
Alignm length: | 301 |
Alignm identity: | 234 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 50, 132 |
Conread position: | 161-463 |
Cow position: | chr5:2977047-2977349 (view UCSC Genome Browser custom track) |
Alignm length: | 305 |
Alignm identity: | 249 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 72, 42 |
Conread position: | 161-463 |
Cow position: | chr5:4963124-4962825 (view UCSC Genome Browser custom track) |
Alignm length: | 303 |
Alignm identity: | 242 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 0 |
Conread position: | 161-463 |
Cow position: | chr5:5106485-5106784 (view UCSC Genome Browser custom track) |
Alignm length: | 303 |
Alignm identity: | 249 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 0 |
Conread position: | 161-463 |
Cow position: | chr5:10479384-10479082 (view UCSC Genome Browser custom track) |
Alignm length: | 306 |
Alignm identity: | 250 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 63, 133 |
Conread position: | 161-463 |
Cow position: | chr5:11835200-11834900 (view UCSC Genome Browser custom track) |
Alignm length: | 303 |
Alignm identity: | 253 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 0 |
Conread position: | 161-463 |
Cow position: | chr5:18118713-18118413 (view UCSC Genome Browser custom track) |
Alignm length: | 303 |
Alignm identity: | 242 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 0 |
Conread position: | 161-463 |
Cow position: | chr5:20107768-20107470 (view UCSC Genome Browser custom track) |
Alignm length: | 303 |
Alignm identity: | 253 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 0 |
Conread position: | 161-463 |
Cow position: | chr5:23882068-23881769 (view UCSC Genome Browser custom track) |
Alignm length: | 303 |
Alignm identity: | 251 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 0 |
Conread position: | 161-463 |
Cow position: | chr5:29255952-29255652 (view UCSC Genome Browser custom track) |
Alignm length: | 303 |
Alignm identity: | 248 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 0 |
Conread position: | 161-463 |
Cow position: | chr5:31285119-31285419 (view UCSC Genome Browser custom track) |
Alignm length: | 303 |
Alignm identity: | 254 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 0 |
Conread position: | 161-463 |
Cow position: | chr5:31709562-31709853 (view UCSC Genome Browser custom track) |
Alignm length: | 303 |
Alignm identity: | 244 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 0 |
Conread position: | 161-463 |
Cow position: | chr5:36369730-36369430 (view UCSC Genome Browser custom track) |
Alignm length: | 303 |
Alignm identity: | 252 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 39, 0 |
Conread position: | 161-463 |
Cow position: | chr5:37380348-37380646 (view UCSC Genome Browser custom track) |
Alignm length: | 303 |
Alignm identity: | 247 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 0 |
Conread position: | 161-463 |
Cow position: | chr5:38883426-38883127 (view UCSC Genome Browser custom track) |
Alignm length: | 303 |
Alignm identity: | 244 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 0 |
Conread position: | 161-463 |
Cow position: | chr5:39363134-39363434 (view UCSC Genome Browser custom track) |
Alignm length: | 303 |
Alignm identity: | 246 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 0 |
Conread position: | 161-463 |
Cow position: | chr5:45179585-45179287 (view UCSC Genome Browser custom track) |
Alignm length: | 303 |
Alignm identity: | 250 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 0 |
Conread position: | 161-463 |
Cow position: | chr5:46779777-46780072 (view UCSC Genome Browser custom track) |
Alignm length: | 304 |
Alignm identity: | 246 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 64, 12 |
Conread position: | 161-463 |
Cow position: | chr5:46816841-46816542 (view UCSC Genome Browser custom track) |
Alignm length: | 303 |
Alignm identity: | 252 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 0 |
Conread position: | 161-463 |
Cow position: | chr5:47565055-47564755 (view UCSC Genome Browser custom track) |
Alignm length: | 303 |
Alignm identity: | 245 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 0 |
Conread position: | 161-463 |
Cow position: | chr5:47565523-47565223 (view UCSC Genome Browser custom track) |
Alignm length: | 303 |
Alignm identity: | 245 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 0 |
Conread position: | 161-463 |
Cow position: | chr5:47590332-47590033 (view UCSC Genome Browser custom track) |
Alignm length: | 303 |
Alignm identity: | 244 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 0 |
Conread position: | 161-463 |
Cow position: | chr5:54927660-54927364 (view UCSC Genome Browser custom track) |
Alignm length: | 303 |
Alignm identity: | 242 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 101, 0 |
Conread position: | 161-463 |
Cow position: | chr5:54929988-54929692 (view UCSC Genome Browser custom track) |
Alignm length: | 303 |
Alignm identity: | 242 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 101, 0 |
Conread position: | 161-463 |
Cow position: | chr5:54951860-54951555 (view UCSC Genome Browser custom track) |
Alignm length: | 308 |
Alignm identity: | 255 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 111, 42 |
Conread position: | 161-463 |
Cow position: | chr5:55722791-55723091 (view UCSC Genome Browser custom track) |
Alignm length: | 303 |
Alignm identity: | 252 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 0 |
Conread position: | 161-463 |
Cow position: | chr5:57986757-57987054 (view UCSC Genome Browser custom track) |
Alignm length: | 303 |
Alignm identity: | 248 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 0 |
Conread position: | 161-463 |
Cow position: | chr5:58192177-58192477 (view UCSC Genome Browser custom track) |
Alignm length: | 303 |
Alignm identity: | 245 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 0 |
Conread position: | 161-463 |
Cow position: | chr5:59064705-59065005 (view UCSC Genome Browser custom track) |
Alignm length: | 303 |
Alignm identity: | 250 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 39, 0 |
Conread position: | 161-463 |
Cow position: | chr5:75754862-75754562 (view UCSC Genome Browser custom track) |
Alignm length: | 303 |
Alignm identity: | 252 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 0 |
Conread position: | 161-464 |
Cow position: | chr5:10542414-10542115 (view UCSC Genome Browser custom track) |
Alignm length: | 304 |
Alignm identity: | 245 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 0 |
Conread position: | 161-464 |
Cow position: | chr5:47343135-47343437 (view UCSC Genome Browser custom track) |
Alignm length: | 305 |
Alignm identity: | 249 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 70, 42 |
Conread position: | 161-464 |
Cow position: | chr5:60519425-60519122 (view UCSC Genome Browser custom track) |
Alignm length: | 308 |
Alignm identity: | 208 |
Alignm E-value: | 5e-36 |
Alignm gaps (pig, cow): | 238, 130 |
Conread position: | 161-464 |
Cow position: | chr5:70593740-70593440 (view UCSC Genome Browser custom track) |
Alignm length: | 304 |
Alignm identity: | 242 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 0 |
Conread position: | 162-445 |
Cow position: | chr5:36410177-36409896 (view UCSC Genome Browser custom track) |
Alignm length: | 284 |
Alignm identity: | 237 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 41, 0 |
Conread position: | 162-463 |
Cow position: | chr5:51746481-51746780 (view UCSC Genome Browser custom track) |
Alignm length: | 302 |
Alignm identity: | 244 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 41, 0 |
Conread position: | 163-464 |
Cow position: | chr5:18250311-18250610 (view UCSC Genome Browser custom track) |
Alignm length: | 302 |
Alignm identity: | 249 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 40, 0 |
Conread position: | 166-464 |
Cow position: | chr5:31097552-31097264 (view UCSC Genome Browser custom track) |
Alignm length: | 300 |
Alignm identity: | 233 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 43, 7 |
Conread position: | 190-460 |
Cow position: | chr5:63648201-63647933 (view UCSC Genome Browser custom track) |
Alignm length: | 273 |
Alignm identity: | 213 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 64, 13 |
Show alignments to all cow chromosomes.