Cow genome map
| Conread name: | Pla1-C0000030_A15 |
| Conread position: | 36-149 |
| Cow position: | chr9:49981759-49981874 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 37-156 |
| Cow position: | chr9:25959407-25959289 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 42-146 |
| Cow position: | chr9:30401553-30401657 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 84 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 43-160 |
| Cow position: | chr9:54413338-54413222 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 137-325 |
| Cow position: | chr9:42404620-42404804 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 141-463 |
| Cow position: | chr9:45876824-45877148 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 66 |
| Conread position: | 143-464 |
| Cow position: | chr9:217805-217476 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 194 |
| Conread position: | 147-399 |
| Cow position: | chr9:55621320-55621074 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 16, 6 |
| Conread position: | 153-463 |
| Cow position: | chr9:1307031-1306720 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 161-271 |
| Cow position: | chr9:49220937-49220828 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 88 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-296 |
| Cow position: | chr9:2873805-2873938 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-309 |
| Cow position: | chr9:54459172-54459026 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-350 |
| Cow position: | chr9:58133273-58133078 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 161-372 |
| Cow position: | chr9:27107249-27107041 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-372 |
| Cow position: | chr9:33999562-33999771 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 167 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 40, 65 |
| Conread position: | 161-373 |
| Cow position: | chr9:17307134-17307347 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 150, 130 |
| Conread position: | 161-373 |
| Cow position: | chr9:49981826-49982037 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 161-374 |
| Cow position: | chr9:13493068-13493270 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 173 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-374 |
| Cow position: | chr9:30139288-30139073 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 46, 121 |
| Conread position: | 161-374 |
| Cow position: | chr9:61023626-61023413 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 162 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 196, 130 |
| Conread position: | 161-393 |
| Cow position: | chr9:25959343-25959115 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 222, 42 |
| Conread position: | 161-446 |
| Cow position: | chr9:6707588-6707305 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-460 |
| Cow position: | chr9:825575-825278 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 67 |
| Conread position: | 161-460 |
| Cow position: | chr9:26478372-26478076 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 48 |
| Conread position: | 161-460 |
| Cow position: | chr9:43670184-43670466 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 40 |
| Conread position: | 161-460 |
| Cow position: | chr9:44920592-44920892 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 106 |
| Conread position: | 161-461 |
| Cow position: | chr9:3052595-3052892 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-463 |
| Cow position: | chr9:771918-771619 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-463 |
| Cow position: | chr9:777481-777181 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-463 |
| Cow position: | chr9:1070954-1070654 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-463 |
| Cow position: | chr9:1838280-1838581 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 42 |
| Conread position: | 161-463 |
| Cow position: | chr9:2681818-2682118 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-463 |
| Cow position: | chr9:3311618-3311916 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 42 |
| Conread position: | 161-463 |
| Cow position: | chr9:4191647-4191947 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-463 |
| Cow position: | chr9:4673385-4673685 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 42 |
| Conread position: | 161-463 |
| Cow position: | chr9:4940169-4939864 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 12 |
| Conread position: | 161-463 |
| Cow position: | chr9:10643616-10643308 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 137 |
| Conread position: | 161-463 |
| Cow position: | chr9:10803002-10803302 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-463 |
| Cow position: | chr9:13312887-13313172 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-463 |
| Cow position: | chr9:18243653-18243353 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-463 |
| Cow position: | chr9:18710822-18711122 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-463 |
| Cow position: | chr9:19545840-19546148 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 42 |
| Conread position: | 161-463 |
| Cow position: | chr9:22570434-22570733 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 42 |
| Conread position: | 161-463 |
| Cow position: | chr9:29083236-29082937 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-463 |
| Cow position: | chr9:29534149-29534449 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-463 |
| Cow position: | chr9:31417186-31416886 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-463 |
| Cow position: | chr9:37908177-37908478 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 42 |
| Conread position: | 161-463 |
| Cow position: | chr9:39303223-39302923 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-463 |
| Cow position: | chr9:42053200-42052906 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 161-463 |
| Cow position: | chr9:50840762-50841076 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 42 |
| Conread position: | 161-464 |
| Cow position: | chr9:126174-125887 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-464 |
| Cow position: | chr9:1983699-1983989 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 161-464 |
| Cow position: | chr9:11477930-11477629 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-464 |
| Cow position: | chr9:14045995-14046293 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-464 |
| Cow position: | chr9:27898358-27898657 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-464 |
| Cow position: | chr9:34059304-34059003 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 161-464 |
| Cow position: | chr9:45975006-45974708 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 162-343 |
| Cow position: | chr9:39697113-39696933 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 151 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 162-464 |
| Cow position: | chr9:34917944-34918236 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 175-461 |
| Cow position: | chr9:4862231-4861950 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 117 |
| Conread position: | 185-464 |
| Cow position: | chr9:11850516-11850236 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 53 |
Show alignments to all cow chromosomes.