Cow genome map
| Conread name: | Pla1-C0000030_A15 |
| Conread position: | 42-147 |
| Cow position: | chrX:10866690-10866585 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 85 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 43-157 |
| Cow position: | chrX:18244165-18244279 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 90 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 43-245 |
| Cow position: | chrX:37488909-37489115 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 104, 154 |
| Conread position: | 44-156 |
| Cow position: | chrX:15140355-15140243 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 90 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 44-160 |
| Cow position: | chrX:150652-150768 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 141-464 |
| Cow position: | chrX:27616026-27616343 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 12 |
| Conread position: | 142-464 |
| Cow position: | chrX:11855383-11855708 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 153 |
| Conread position: | 144-305 |
| Cow position: | chrX:3569271-3569432 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 19, 60 |
| Conread position: | 144-463 |
| Cow position: | chrX:2486412-2486092 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 60 |
| Conread position: | 144-464 |
| Cow position: | chrX:1947730-1947420 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 68 |
| Conread position: | 146-463 |
| Cow position: | chrX:21343619-21343932 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 9 |
| Conread position: | 146-463 |
| Cow position: | chrX:24735167-24735482 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 146-464 |
| Cow position: | chrX:40384268-40384585 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 57 |
| Conread position: | 146-464 |
| Cow position: | chrX:40601341-40601658 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 57 |
| Conread position: | 147-325 |
| Cow position: | chrX:40070387-40070210 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 16, 6 |
| Conread position: | 147-355 |
| Cow position: | chrX:41791491-41791282 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 163 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 13, 6 |
| Conread position: | 147-463 |
| Cow position: | chrX:26760344-26760030 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 6 |
| Conread position: | 153-463 |
| Cow position: | chrX:26275367-26275677 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 51 |
| Conread position: | 156-374 |
| Cow position: | chrX:38228080-38227863 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 168 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 67, 47 |
| Conread position: | 157-463 |
| Cow position: | chrX:18462741-18462437 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 160-463 |
| Cow position: | chrX:3372616-3372315 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 160-463 |
| Cow position: | chrX:13030974-13030673 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 161-287 |
| Cow position: | chrX:20356757-20356632 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-336 |
| Cow position: | chrX:5426479-5426306 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-342 |
| Cow position: | chrX:15977715-15977536 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 149 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-349 |
| Cow position: | chrX:7444145-7444331 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 157 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-353 |
| Cow position: | chrX:39292980-39292790 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 158 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-365 |
| Cow position: | chrX:13206190-13206392 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 165 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-373 |
| Cow position: | chrX:29790581-29790373 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 161-396 |
| Cow position: | chrX:22077104-22076871 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-424 |
| Cow position: | chrX:29779961-29780225 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 155 |
| Conread position: | 161-439 |
| Cow position: | chrX:15151437-15151163 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-461 |
| Cow position: | chrX:14782107-14781810 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-461 |
| Cow position: | chrX:27445915-27446231 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 229 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 186, 90 |
| Conread position: | 161-463 |
| Cow position: | chrX:2500393-2500093 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-463 |
| Cow position: | chrX:2559722-2559422 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-463 |
| Cow position: | chrX:2579657-2579957 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-463 |
| Cow position: | chrX:3081893-3081593 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-463 |
| Cow position: | chrX:3361059-3361359 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-463 |
| Cow position: | chrX:3464839-3464538 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 42 |
| Conread position: | 161-463 |
| Cow position: | chrX:5124121-5123821 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-463 |
| Cow position: | chrX:5406298-5406597 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-463 |
| Cow position: | chrX:6372418-6372719 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 42 |
| Conread position: | 161-463 |
| Cow position: | chrX:6870326-6870025 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 42 |
| Conread position: | 161-463 |
| Cow position: | chrX:7096696-7096996 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-463 |
| Cow position: | chrX:10931911-10932211 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-463 |
| Cow position: | chrX:16086885-16086586 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-463 |
| Cow position: | chrX:17054807-17055107 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-463 |
| Cow position: | chrX:20742230-20742525 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-463 |
| Cow position: | chrX:21768042-21768342 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-463 |
| Cow position: | chrX:24769619-24769322 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-463 |
| Cow position: | chrX:25289441-25289141 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-463 |
| Cow position: | chrX:26617683-26617383 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-463 |
| Cow position: | chrX:28518482-28518183 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 161-463 |
| Cow position: | chrX:29083305-29083616 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 42 |
| Conread position: | 161-463 |
| Cow position: | chrX:35533092-35533389 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-463 |
| Cow position: | chrX:38330620-38330920 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-463 |
| Cow position: | chrX:39560414-39560114 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-464 |
| Cow position: | chrX:323152-323454 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 161-464 |
| Cow position: | chrX:11083368-11083071 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 102 |
| Conread position: | 161-464 |
| Cow position: | chrX:21592529-21592826 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 161-464 |
| Cow position: | chrX:22887898-22888197 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 161-464 |
| Cow position: | chrX:24173923-24173626 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 161-464 |
| Cow position: | chrX:27590792-27590494 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 259, 42 |
| Conread position: | 161-464 |
| Cow position: | chrX:29722457-29722751 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 161-464 |
| Cow position: | chrX:30139546-30139245 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 162-320 |
| Cow position: | chrX:35024299-35024450 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 162-464 |
| Cow position: | chrX:44206201-44206502 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 279, 129 |
| Conread position: | 163-461 |
| Cow position: | chrX:45903417-45903713 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 189-316 |
| Cow position: | chrX:8482704-8482830 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 193-460 |
| Cow position: | chrX:29876788-29876526 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 30, 10 |
Show alignments to all cow chromosomes.