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Cow genome map

           
Conread name:
           
Pla1-C0000037_O09
        

               
Conread position:
               
67-361
               

               
Cow position:
               
chr5:35647638-35647356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
12, 104
               

               
Conread position:
               
68-177
               

               
Cow position:
               
chr5:36258257-36258366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
79-331
               

               
Cow position:
               
chr5:1090520-1090776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
9, 56
               

               
Conread position:
               
80-432
               

               
Cow position:
               
chr5:1165461-1165115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
9, 28
               

               
Conread position:
               
82-406
               

               
Cow position:
               
chr5:58447073-58446774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
291, 10
               

               
Conread position:
               
83-220
               

               
Cow position:
               
chr5:61811459-61811322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
103, 11
               

               
Conread position:
               
83-227
               

               
Cow position:
               
chr5:26728482-26728344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
7, 36
               

               
Conread position:
               
87-181
               

               
Cow position:
               
chr5:44868596-44868503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
95
               

               
Alignm identity:
               
80
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
88-357
               

               
Cow position:
               
chr5:49259749-49260019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
105, 18
               

               
Conread position:
               
88-406
               

               
Cow position:
               
chr5:40559917-40559605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 105
               

               
Conread position:
               
89-195
               

               
Cow position:
               
chr5:33273937-33273831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
108
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
21, 90
               

               
Conread position:
               
89-349
               

               
Cow position:
               
chr5:42622902-42623154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
89-361
               

               
Cow position:
               
chr5:9859135-9859406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
14, 92
               

               
Conread position:
               
89-376
               

               
Cow position:
               
chr5:56428053-56428313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
25, 16
               

               
Conread position:
               
89-390
               

               
Cow position:
               
chr5:32379117-32378831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
46, 116
               

               
Conread position:
               
89-406
               

               
Cow position:
               
chr5:37378143-37377832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
19, 247
               

               
Conread position:
               
93-407
               

               
Cow position:
               
chr5:43992585-43992289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
288, 85
               

               
Conread position:
               
94-181
               

               
Cow position:
               
chr5:16937800-16937886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
88
               

               
Alignm identity:
               
77
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
94-203
               

               
Cow position:
               
chr5:52108024-52108130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
94-204
               

               
Cow position:
               
chr5:13392872-13392760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
12, 85
               

               
Conread position:
               
94-268
               

               
Cow position:
               
chr5:36207308-36207481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
84, 137
               

               
Conread position:
               
94-288
               

               
Cow position:
               
chr5:52268066-52268256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
153, 84
               

               
Conread position:
               
94-322
               

               
Cow position:
               
chr5:28324595-28324387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
14, 77
               

               
Conread position:
               
94-338
               

               
Cow position:
               
chr5:54067767-54068005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
154, 76
               

               
Conread position:
               
94-342
               

               
Cow position:
               
chr5:4956348-4956580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
94-378
               

               
Cow position:
               
chr5:27293615-27293889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
280, 84
               

               
Conread position:
               
94-407
               

               
Cow position:
               
chr5:34301180-34300883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
19, 85
               

               
Conread position:
               
94-407
               

               
Cow position:
               
chr5:45419855-45420167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
95, 84
               

               
Conread position:
               
94-407
               

               
Cow position:
               
chr5:59115666-59115354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
86, 56
               

               
Conread position:
               
95-370
               

               
Cow position:
               
chr5:44874455-44874197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
95-376
               

               
Cow position:
               
chr5:35513500-35513213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
76, 135
               

               
Conread position:
               
95-407
               

               
Cow position:
               
chr5:58856381-58856071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 71
               

               
Conread position:
               
95-407
               

               
Cow position:
               
chr5:59872804-59873124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
111, 10
               

               
Conread position:
               
96-297
               

               
Cow position:
               
chr5:32262038-32262243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
19, 86
               

               
Conread position:
               
96-401
               

               
Cow position:
               
chr5:54060575-54060249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
77, 39
               

               
Conread position:
               
100-201
               

               
Cow position:
               
chr5:31975760-31975658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
101-216
               

               
Cow position:
               
chr5:64432400-64432287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
116
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
101-228
               

               
Cow position:
               
chr5:55130206-55130077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
85, 77
               

               
Conread position:
               
101-318
               

               
Cow position:
               
chr5:29860600-29860388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
101-384
               

               
Cow position:
               
chr5:4709868-4710161 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
68, 227
               

               
Conread position:
               
101-407
               

               
Cow position:
               
chr5:2851877-2851555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
69, 38
               

               
Conread position:
               
101-407
               

               
Cow position:
               
chr5:30949629-30949950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 35
               

               
Conread position:
               
101-407
               

               
Cow position:
               
chr5:54311583-54311302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
281, 78
               

               
Conread position:
               
105-225
               

               
Cow position:
               
chr5:14416037-14415914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
10, 74
               

               
Conread position:
               
105-380
               

               
Cow position:
               
chr5:63656749-63656472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 24
               

               
Conread position:
               
106-337
               

               
Cow position:
               
chr5:46702995-46702765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
73, 40
               

               
Conread position:
               
106-407
               

               
Cow position:
               
chr5:51935442-51935159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
109-407
               

               
Cow position:
               
chr5:54767664-54767942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
277, 58
               

               
Conread position:
               
111-294
               

               
Cow position:
               
chr5:51564941-51564765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
68, 14
               

               
Conread position:
               
116-351
               

               
Cow position:
               
chr5:46749574-46749798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
116-378
               

               
Cow position:
               
chr5:51490005-51490250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
256, 62
               

               
Conread position:
               
116-407
               

               
Cow position:
               
chr5:56338779-56339053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
265, 23
               

               
Conread position:
               
118-340
               

               
Cow position:
               
chr5:40515034-40515252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
7, 48
               

               
Conread position:
               
134-407
               

               
Cow position:
               
chr5:36856283-36856552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
62, 44
               

               
Conread position:
               
138-350
               

               
Cow position:
               
chr5:6130806-6130594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
53, 40
               

               
Conread position:
               
139-407
               

               
Cow position:
               
chr5:55019521-55019259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
140-372
               

               
Cow position:
               
chr5:14742449-14742216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
154-339
               

               
Cow position:
               
chr5:18091223-18091039 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
10, 65
               

               
Conread position:
               
161-316
               

               
Cow position:
               
chr5:54153996-54154144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
161-407
               

               
Cow position:
               
chr5:26990598-26990359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
165-338
               

               
Cow position:
               
chr5:56485282-56485110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
30, 13
               

               
Conread position:
               
165-407
               

               
Cow position:
               
chr5:54086747-54086510 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
8, 61
               

               
Conread position:
               
168-353
               

               
Cow position:
               
chr5:54436964-54436777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
20, 29
               

               
Conread position:
               
168-372
               

               
Cow position:
               
chr5:55129547-55129345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
38, 10
               

               
Conread position:
               
168-407
               

               
Cow position:
               
chr5:36839164-36838924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
58, 21
               

               
Conread position:
               
171-383
               

               
Cow position:
               
chr5:60908873-60908658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
8, 153
               

               
Conread position:
               
171-407
               

               
Cow position:
               
chr5:34625162-34624924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
53, 19
               

               
Conread position:
               
173-369
               

               
Cow position:
               
chr5:1396803-1396605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
13, 87
               

               
Conread position:
               
176-348
               

               
Cow position:
               
chr5:45037447-45037276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
14, 31
               

               
Conread position:
               
176-407
               

               
Cow position:
               
chr5:69731695-69731470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
26, 53
               

               
Conread position:
               
177-401
               

               
Cow position:
               
chr5:46672400-46672178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
11, 32
               

               
Conread position:
               
178-406
               

               
Cow position:
               
chr5:37808472-37808702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
193, 18
               

               
Conread position:
               
179-346
               

               
Cow position:
               
chr5:57744729-57744896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
41, 27
               

               
Conread position:
               
180-400
               

               
Cow position:
               
chr5:47696253-47696472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
15, 135
               

               
Conread position:
               
183-407
               

               
Cow position:
               
chr5:28302552-28302783 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
144, 217
               

               
Conread position:
               
186-397
               

               
Cow position:
               
chr5:49341862-49342074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
198, 20
               

               
Conread position:
               
187-361
               

               
Cow position:
               
chr5:12738375-12738542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
19, 9
               

               
Conread position:
               
187-407
               

               
Cow position:
               
chr5:49685088-49685303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
19, 67
               

               
Conread position:
               
188-352
               

               
Cow position:
               
chr5:38382616-38382777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
46, 9
               

               
Conread position:
               
189-406
               

               
Cow position:
               
chr5:46322621-46322829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
181, 7
               

               
Conread position:
               
189-407
               

               
Cow position:
               
chr5:53855888-53855665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
122, 17
               

               
Conread position:
               
190-365
               

               
Cow position:
               
chr5:65050027-65050202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
154, 124
               

               
Conread position:
               
191-403
               

               
Cow position:
               
chr5:52108086-52108296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
11, 42
               

               
Conread position:
               
191-407
               

               
Cow position:
               
chr5:64758585-64758804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
183, 30
               

               
Conread position:
               
192-367
               

               
Cow position:
               
chr5:56361974-56361803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
14, 41
               

               
Conread position:
               
192-401
               

               
Cow position:
               
chr5:61875717-61875515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
16, 32
               

               
Conread position:
               
194-390
               

               
Cow position:
               
chr5:58555317-58555118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
12, 31
               

               
Conread position:
               
194-407
               

               
Cow position:
               
chr5:57737282-57737071 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
13, 180
               

               
Conread position:
               
194-407
               

               
Cow position:
               
chr5:74858750-74858539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
174, 10
               

               
Conread position:
               
196-407
               

               
Cow position:
               
chr5:56317464-56317264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
197-406
               

               
Cow position:
               
chr5:41981544-41981338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
177, 9
               

               
Conread position:
               
197-407
               

               
Cow position:
               
chr5:55795789-55795998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
112, 175
               

               
Conread position:
               
197-408
               

               
Cow position:
               
chr5:26476842-26477055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
179, 9
               

               
Conread position:
               
199-376
               

               
Cow position:
               
chr5:25020595-25020769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
199-406
               

               
Cow position:
               
chr5:59325667-59325867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
39, 7
               

               
Conread position:
               
203-407
               

               
Cow position:
               
chr5:47316803-47317004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
5, 18
               

               
Conread position:
               
205-340
               

               
Cow position:
               
chr5:44901678-44901543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
18, 36
               

               
Conread position:
               
205-346
               

               
Cow position:
               
chr5:695027-694892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
40, 15
               

               
Conread position:
               
205-407
               

               
Cow position:
               
chr5:6443984-6444184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
20, 98
               

               
Conread position:
               
206-372
               

               
Cow position:
               
chr5:39447365-39447533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
61, 17
               

               
Conread position:
               
206-402
               

               
Cow position:
               
chr5:35969700-35969507 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
127, 0
               

               
Conread position:
               
206-407
               

               
Cow position:
               
chr5:7698168-7697972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
155, 0
               

               
Conread position:
               
206-407
               

               
Cow position:
               
chr5:23678537-23678735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
168, 27
               

               
Conread position:
               
206-407
               

               
Cow position:
               
chr5:36855374-36855172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
116, 167
               

               
Conread position:
               
206-407
               

               
Cow position:
               
chr5:52000388-52000189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
24, 85
               

               
Conread position:
               
207-343
               

               
Cow position:
               
chr5:4347539-4347673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
207-372
               

               
Cow position:
               
chr5:67634347-67634515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
207-407
               

               
Cow position:
               
chr5:33273858-33273657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
120, 17
               

               
Conread position:
               
208-376
               

               
Cow position:
               
chr5:2827538-2827373 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
208-400
               

               
Cow position:
               
chr5:21039818-21040001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
24, 15
               

               
Conread position:
               
208-405
               

               
Cow position:
               
chr5:9089862-9090052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
208-406
               

               
Cow position:
               
chr5:67932308-67932499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
166, 31
               

               
Conread position:
               
209-407
               

               
Cow position:
               
chr5:66972594-66972395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
169, 161
               

               
Conread position:
               
212-415
               

               
Cow position:
               
chr5:9369108-9369308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
11, 159
               

               
Conread position:
               
215-359
               

               
Cow position:
               
chr5:47743788-47743643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
17, 72
               

               
Conread position:
               
216-345
               

               
Cow position:
               
chr5:19079406-19079281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
216-378
               

               
Cow position:
               
chr5:11562566-11562727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
111, 16
               

               
Conread position:
               
216-405
               

               
Cow position:
               
chr5:35459135-35459327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
78, 180
               

               
Conread position:
               
216-406
               

               
Cow position:
               
chr5:44752146-44752349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
216-407
               

               
Cow position:
               
chr5:20779238-20779429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
7, 114
               

               
Conread position:
               
216-407
               

               
Cow position:
               
chr5:55177042-55176857 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
146, 7
               

               
Conread position:
               
217-348
               

               
Cow position:
               
chr5:36823040-36822913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
218-346
               

               
Cow position:
               
chr5:16668854-16668725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
5, 0
               

               
Conread position:
               
218-407
               

               
Cow position:
               
chr5:30845267-30845078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
5, 95
               

               
Conread position:
               
218-407
               

               
Cow position:
               
chr5:41713454-41713264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
66, 17
               

               
Conread position:
               
219-365
               

               
Cow position:
               
chr5:11229520-11229663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
148
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
59, 11
               

               
Conread position:
               
219-407
               

               
Cow position:
               
chr5:41294236-41294048 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
33, 115
               

               
Conread position:
               
221-390
               

               
Cow position:
               
chr5:56287349-56287519 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
140, 149
               

               
Conread position:
               
221-406
               

               
Cow position:
               
chr5:39258659-39258480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
22, 86
               

               
Conread position:
               
221-407
               

               
Cow position:
               
chr5:15471082-15470899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
161, 91
               

               
Conread position:
               
221-407
               

               
Cow position:
               
chr5:40109645-40109458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
160, 79
               

               
Conread position:
               
221-407
               

               
Cow position:
               
chr5:45273349-45273533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
153, 35
               

               
Conread position:
               
222-331
               

               
Cow position:
               
chr5:29979806-29979915 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
110
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
222-346
               

               
Cow position:
               
chr5:49821579-49821456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
222-347
               

               
Cow position:
               
chr5:44734573-44734698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
222-349
               

               
Cow position:
               
chr5:51277702-51277828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
222-359
               

               
Cow position:
               
chr5:26147742-26147606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
222-379
               

               
Cow position:
               
chr5:57062376-57062534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
24, 13
               

               
Conread position:
               
222-382
               

               
Cow position:
               
chr5:56860593-56860441 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
222-382
               

               
Cow position:
               
chr5:62378932-62378774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
144, 90
               

               
Conread position:
               
222-385
               

               
Cow position:
               
chr5:63059213-63059064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
222-386
               

               
Cow position:
               
chr5:29352974-29353136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
21, 38
               

               
Conread position:
               
222-400
               

               
Cow position:
               
chr5:30805316-30805140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
222-401
               

               
Cow position:
               
chr5:57230185-57230367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
222-405
               

               
Cow position:
               
chr5:42845439-42845628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
222-406
               

               
Cow position:
               
chr5:30247375-30247552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
222-406
               

               
Cow position:
               
chr5:50713604-50713803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
222-406
               

               
Cow position:
               
chr5:60715216-60715394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
158, 92
               

               
Conread position:
               
222-407
               

               
Cow position:
               
chr5:16206003-16206188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
72, 110
               

               
Conread position:
               
222-407
               

               
Cow position:
               
chr5:17602053-17602234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
145, 101
               

               
Conread position:
               
222-407
               

               
Cow position:
               
chr5:43929584-43929771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
152, 111
               

               
Conread position:
               
222-407
               

               
Cow position:
               
chr5:55956064-55955874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
62, 24
               

               
Conread position:
               
222-407
               

               
Cow position:
               
chr5:60183958-60183768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
22, 176
               

               
Conread position:
               
222-407
               

               
Cow position:
               
chr5:63234676-63234859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
15, 111
               

               
Conread position:
               
222-407
               

               
Cow position:
               
chr5:69337972-69337790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
161, 0
               

               
Conread position:
               
222-407
               

               
Cow position:
               
chr5:69461487-69461297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
72, 60
               

               
Conread position:
               
222-445
               

               
Cow position:
               
chr5:57101372-57101595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
8.99998e-41
               

               
Alignm gaps (pig, cow):
               
148, 31
               

               
Conread position:
               
223-345
               

               
Cow position:
               
chr5:21003465-21003345 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
42, 90
               

               
Conread position:
               
223-348
               

               
Cow position:
               
chr5:16185529-16185404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
223-352
               

               
Cow position:
               
chr5:35190261-35190132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
223-353
               

               
Cow position:
               
chr5:38040413-38040543 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
28, 35
               

               
Conread position:
               
223-372
               

               
Cow position:
               
chr5:2469061-2469205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
223-372
               

               
Cow position:
               
chr5:6520161-6520013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
93, 29
               

               
Conread position:
               
223-372
               

               
Cow position:
               
chr5:30276841-30276692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
223-372
               

               
Cow position:
               
chr5:52723726-52723579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
12, 38
               

               
Conread position:
               
223-386
               

               
Cow position:
               
chr5:12760971-12761131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
151, 17
               

               
Conread position:
               
223-386
               

               
Cow position:
               
chr5:64523711-64523876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
11, 35
               

               
Conread position:
               
223-388
               

               
Cow position:
               
chr5:45225665-45225827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
18, 35
               

               
Conread position:
               
223-390
               

               
Cow position:
               
chr5:25597984-25597820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
20, 108
               

               
Conread position:
               
223-403
               

               
Cow position:
               
chr5:30253892-30253712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
157, 170
               

               
Conread position:
               
223-406
               

               
Cow position:
               
chr5:50101223-50101410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
28, 35
               

               
Conread position:
               
223-406
               

               
Cow position:
               
chr5:53947048-53946864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
151, 0
               

               
Conread position:
               
223-407
               

               
Cow position:
               
chr5:4031835-4032025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
66, 95
               

               
Conread position:
               
223-407
               

               
Cow position:
               
chr5:12902068-12901884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
131, 156
               

               
Conread position:
               
223-407
               

               
Cow position:
               
chr5:17999345-17999525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
151, 87
               

               
Conread position:
               
223-407
               

               
Cow position:
               
chr5:18574325-18574140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
20, 78
               

               
Conread position:
               
223-407
               

               
Cow position:
               
chr5:26094015-26094201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
151, 172
               

               
Conread position:
               
223-407
               

               
Cow position:
               
chr5:35208412-35208231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
89, 0
               

               
Conread position:
               
223-407
               

               
Cow position:
               
chr5:41935506-41935686 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
28, 35
               

               
Conread position:
               
223-407
               

               
Cow position:
               
chr5:42064356-42064170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
150, 0
               

               
Conread position:
               
223-407
               

               
Cow position:
               
chr5:52165028-52165211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
151, 49
               

               
Conread position:
               
223-407
               

               
Cow position:
               
chr5:55756264-55756458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
223-407
               

               
Cow position:
               
chr5:56071011-56070823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
223-407
               

               
Cow position:
               
chr5:57156163-57156347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
122, 17
               

               
Conread position:
               
223-407
               

               
Cow position:
               
chr5:57686586-57686774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
151, 0
               

               
Conread position:
               
223-407
               

               
Cow position:
               
chr5:57994728-57994900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
223-411
               

               
Cow position:
               
chr5:18062169-18062357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
158, 5
               

               
Conread position:
               
223-445
               

               
Cow position:
               
chr5:33560583-33560803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
158, 148
               

               
Conread position:
               
224-381
               

               
Cow position:
               
chr5:59627250-59627093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
224-382
               

               
Cow position:
               
chr5:4267821-4267661 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
224-383
               

               
Cow position:
               
chr5:73167862-73168017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
224-396
               

               
Cow position:
               
chr5:24946390-24946219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
95, 32
               

               
Conread position:
               
224-406
               

               
Cow position:
               
chr5:54350211-54350395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-35
               

               
Alignm gaps (pig, cow):
               
148, 0
               

               
Conread position:
               
224-407
               

               
Cow position:
               
chr5:7012701-7012881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
157, 37
               

               
Conread position:
               
224-407
               

               
Cow position:
               
chr5:11668035-11668217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
161, 0
               

               
Conread position:
               
224-407
               

               
Cow position:
               
chr5:14903917-14904105 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
19, 110
               

               
Conread position:
               
224-407
               

               
Cow position:
               
chr5:15479275-15479091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
152, 43
               

               
Conread position:
               
224-407
               

               
Cow position:
               
chr5:20994936-20995128 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
224-407
               

               
Cow position:
               
chr5:44446715-44446901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
129, 0
               

               
Conread position:
               
225-382
               

               
Cow position:
               
chr5:33155962-33155811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
226-386
               

               
Cow position:
               
chr5:4226494-4226335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
226-386
               

               
Cow position:
               
chr5:29771676-29771515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
146, 0
               

               
Conread position:
               
226-406
               

               
Cow position:
               
chr5:27188263-27188093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
148, 74
               

               
Conread position:
               
228-348
               

               
Cow position:
               
chr5:20882478-20882598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
228-395
               

               
Cow position:
               
chr5:64175980-64176144 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
228-407
               

               
Cow position:
               
chr5:35982589-35982774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
230-346
               

               
Cow position:
               
chr5:30638434-30638551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
70, 0
               

               
Conread position:
               
231-331
               

               
Cow position:
               
chr5:17644485-17644585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
101
               

               
Alignm identity:
               
83
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
231-343
               

               
Cow position:
               
chr5:70353840-70353953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
231-358
               

               
Cow position:
               
chr5:5847703-5847829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
231-365
               

               
Cow position:
               
chr5:58519273-58519407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
17, 27
               

               
Conread position:
               
231-367
               

               
Cow position:
               
chr5:26723590-26723455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
231-367
               

               
Cow position:
               
chr5:60948275-60948140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
72, 78
               

               
Conread position:
               
231-371
               

               
Cow position:
               
chr5:5016568-5016432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
231-372
               

               
Cow position:
               
chr5:12300054-12299913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
17, 27
               

               
Conread position:
               
231-372
               

               
Cow position:
               
chr5:15364412-15364271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
7, 71
               

               
Conread position:
               
231-372
               

               
Cow position:
               
chr5:61049475-61049334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
21, 27
               

               
Conread position:
               
231-377
               

               
Cow position:
               
chr5:34914910-34915056 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
231-378
               

               
Cow position:
               
chr5:56613420-56613567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
17, 141
               

               
Conread position:
               
231-379
               

               
Cow position:
               
chr5:17566295-17566444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
13, 107
               

               
Conread position:
               
231-381
               

               
Cow position:
               
chr5:5257145-5257295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
231-381
               

               
Cow position:
               
chr5:44163225-44163375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
92, 141
               

               
Conread position:
               
231-385
               

               
Cow position:
               
chr5:39937258-39937104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
143, 102
               

               
Conread position:
               
231-391
               

               
Cow position:
               
chr5:17104993-17104836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
231-400
               

               
Cow position:
               
chr5:34528689-34528527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
34, 49
               

               
Conread position:
               
231-401
               

               
Cow position:
               
chr5:44796590-44796759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
147, 0
               

               
Conread position:
               
231-403
               

               
Cow position:
               
chr5:22242622-22242805 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
66, 80
               

               
Conread position:
               
231-405
               

               
Cow position:
               
chr5:6503738-6503914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
16, 27
               

               
Conread position:
               
231-405
               

               
Cow position:
               
chr5:19524043-19523869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
19, 28
               

               
Conread position:
               
231-405
               

               
Cow position:
               
chr5:28224595-28224423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
231-405
               

               
Cow position:
               
chr5:38739260-38739430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
129, 136
               

               
Conread position:
               
231-407
               

               
Cow position:
               
chr5:458631-458458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
231-407
               

               
Cow position:
               
chr5:4280591-4280415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
115, 142
               

               
Conread position:
               
231-407
               

               
Cow position:
               
chr5:11769412-11769236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
139, 90
               

               
Conread position:
               
231-407
               

               
Cow position:
               
chr5:12557144-12557325 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
231-407
               

               
Cow position:
               
chr5:18289265-18289097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
142, 79
               

               
Conread position:
               
231-407
               

               
Cow position:
               
chr5:19752445-19752271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
143, 78
               

               
Conread position:
               
231-407
               

               
Cow position:
               
chr5:41165231-41165053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
231-407
               

               
Cow position:
               
chr5:44993906-44994075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
142, 80
               

               
Conread position:
               
231-407
               

               
Cow position:
               
chr5:45397712-45397539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
142, 56
               

               
Conread position:
               
231-407
               

               
Cow position:
               
chr5:47323605-47323432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3.9937e-43
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
231-407
               

               
Cow position:
               
chr5:49501681-49501858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
143, 0
               

               
Conread position:
               
231-407
               

               
Cow position:
               
chr5:51053506-51053683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
91, 134
               

               
Conread position:
               
231-407
               

               
Cow position:
               
chr5:57526786-57526951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
231-407
               

               
Cow position:
               
chr5:64591952-64592129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
162, 130
               

               
Conread position:
               
231-408
               

               
Cow position:
               
chr5:58790-58968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
17, 27
               

               
Conread position:
               
231-408
               

               
Cow position:
               
chr5:3589170-3588992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
142, 68
               

               
Conread position:
               
231-408
               

               
Cow position:
               
chr5:71494964-71494785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
149, 0
               

               
Conread position:
               
231-434
               

               
Cow position:
               
chr5:60210000-60210205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
17, 27
               

               
Conread position:
               
231-439
               

               
Cow position:
               
chr5:72903093-72903293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
18, 25
               

               
Conread position:
               
231-441
               

               
Cow position:
               
chr5:3771989-3771782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
143, 101
               

               
Conread position:
               
232-344
               

               
Cow position:
               
chr5:64843829-64843941 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
88
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
232-349
               

               
Cow position:
               
chr5:51490460-51490577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
232-359
               

               
Cow position:
               
chr5:7177293-7177166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
98
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
14, 26
               

               
Conread position:
               
232-379
               

               
Cow position:
               
chr5:72045534-72045678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
12, 81
               

               
Conread position:
               
232-385
               

               
Cow position:
               
chr5:43858278-43858429 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
232-390
               

               
Cow position:
               
chr5:16937887-16938038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
160
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
150, 47
               

               
Conread position:
               
232-402
               

               
Cow position:
               
chr5:38833263-38833093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
138, 100
               

               
Conread position:
               
232-406
               

               
Cow position:
               
chr5:2309416-2309589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
143, 21
               

               
Conread position:
               
232-407
               

               
Cow position:
               
chr5:28035884-28035708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
141, 24
               

               
Conread position:
               
232-407
               

               
Cow position:
               
chr5:50575925-50575752 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
232-407
               

               
Cow position:
               
chr5:61455985-61455812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
139, 10
               

               
Conread position:
               
232-407
               

               
Cow position:
               
chr5:67212502-67212323 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
138, 22
               

               
Conread position:
               
232-439
               

               
Cow position:
               
chr5:30092478-30092687 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
38, 18
               

               
Conread position:
               
233-376
               

               
Cow position:
               
chr5:60514887-60515030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
12, 57
               

               
Conread position:
               
233-379
               

               
Cow position:
               
chr5:34347594-34347733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
69, 0
               

               
Conread position:
               
233-379
               

               
Cow position:
               
chr5:65552576-65552712 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
233-405
               

               
Cow position:
               
chr5:68537528-68537699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
141, 10
               

               
Conread position:
               
233-406
               

               
Cow position:
               
chr5:22446050-22445882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
53, 19
               

               
Conread position:
               
233-407
               

               
Cow position:
               
chr5:45405185-45405008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
14, 25
               

               
Conread position:
               
233-407
               

               
Cow position:
               
chr5:61784586-61784761 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
14, 25
               

               
Conread position:
               
234-328
               

               
Cow position:
               
chr5:38418656-38418563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
95
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
62, 0
               

               
Conread position:
               
234-403
               

               
Cow position:
               
chr5:43604277-43604114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
234-407
               

               
Cow position:
               
chr5:63987306-63987482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
143, 73
               

               
Conread position:
               
234-407
               

               
Cow position:
               
chr5:64140678-64140500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
234-447
               

               
Cow position:
               
chr5:50871957-50871733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
71, 189
               

               
Conread position:
               
234-447
               

               
Cow position:
               
chr5:70678505-70678717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
15, 23
               

               
Conread position:
               
235-374
               

               
Cow position:
               
chr5:37757700-37757834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
235-383
               

               
Cow position:
               
chr5:71454473-71454619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
131, 0
               

               
Conread position:
               
235-386
               

               
Cow position:
               
chr5:35784850-35784999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
35, 78
               

               
Conread position:
               
235-391
               

               
Cow position:
               
chr5:39875263-39875109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
136, 0
               

               
Conread position:
               
235-406
               

               
Cow position:
               
chr5:359800-359974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
12, 24
               

               
Conread position:
               
235-406
               

               
Cow position:
               
chr5:7723804-7723633 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
128, 141
               

               
Conread position:
               
235-406
               

               
Cow position:
               
chr5:29515366-29515528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
160, 83
               

               
Conread position:
               
235-407
               

               
Cow position:
               
chr5:18899112-18898943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
235-407
               

               
Cow position:
               
chr5:20128192-20128021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
8, 137
               

               
Conread position:
               
235-407
               

               
Cow position:
               
chr5:22643093-22643258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
235-407
               

               
Cow position:
               
chr5:23529144-23529313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
138, 22
               

               
Conread position:
               
235-407
               

               
Cow position:
               
chr5:49474406-49474581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
146, 134
               

               
Conread position:
               
235-407
               

               
Cow position:
               
chr5:55068845-55068673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
140, 155
               

               
Conread position:
               
235-407
               

               
Cow position:
               
chr5:56153754-56153581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
137, 64
               

               
Conread position:
               
235-407
               

               
Cow position:
               
chr5:57767848-57768014 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
235-407
               

               
Cow position:
               
chr5:60747142-60747311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
149, 39
               

               
Conread position:
               
236-379
               

               
Cow position:
               
chr5:72006727-72006868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
236-401
               

               
Cow position:
               
chr5:5855996-5855834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
236-407
               

               
Cow position:
               
chr5:4221116-4220951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
119, 103
               

               
Conread position:
               
236-407
               

               
Cow position:
               
chr5:26262541-26262709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
143, 74
               

               
Conread position:
               
237-379
               

               
Cow position:
               
chr5:65679836-65679974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
237-406
               

               
Cow position:
               
chr5:29828183-29828017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
100, 29
               

               
Conread position:
               
242-376
               

               
Cow position:
               
chr5:6528817-6528681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
7e-28
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
242-432
               

               
Cow position:
               
chr5:48867332-48867522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
163, 148
               

               
Conread position:
               
243-379
               

               
Cow position:
               
chr5:30562063-30561927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
243-382
               

               
Cow position:
               
chr5:43844532-43844670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
243-398
               

               
Cow position:
               
chr5:63627404-63627551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
140, 56
               

               
Conread position:
               
243-406
               

               
Cow position:
               
chr5:27306435-27306272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
120, 102
               

               
Conread position:
               
243-407
               

               
Cow position:
               
chr5:40237342-40237180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
127, 112
               

               
Conread position:
               
243-407
               

               
Cow position:
               
chr5:44847890-44848053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
91, 131
               

               
Conread position:
               
243-407
               

               
Cow position:
               
chr5:57074200-57074367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
135, 153
               

               
Conread position:
               
244-405
               

               
Cow position:
               
chr5:45574235-45574399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
135, 0
               

               
Conread position:
               
244-407
               

               
Cow position:
               
chr5:19813090-19813256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
131, 161
               

               
Conread position:
               
247-377
               

               
Cow position:
               
chr5:56467817-56467688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
247-403
               

               
Cow position:
               
chr5:30233034-30232876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
133, 23
               

               
Conread position:
               
247-406
               

               
Cow position:
               
chr5:60189120-60188957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
71, 0
               

               
Conread position:
               
250-376
               

               
Cow position:
               
chr5:41129866-41129740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
250-377
               

               
Cow position:
               
chr5:55350786-55350914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
130
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
75, 123
               

               
Conread position:
               
250-378
               

               
Cow position:
               
chr5:57736575-57736697 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
250-386
               

               
Cow position:
               
chr5:67540077-67540213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
251-405
               

               
Cow position:
               
chr5:23357452-23357305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
253-407
               

               
Cow position:
               
chr5:58793486-58793642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
254-407
               

               
Cow position:
               
chr5:1087079-1087230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
254-407
               

               
Cow position:
               
chr5:16214807-16214651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
120, 0
               

               
Conread position:
               
255-389
               

               
Cow position:
               
chr5:62415842-62415974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
121, 0
               

               
Conread position:
               
255-407
               

               
Cow position:
               
chr5:32696704-32696856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
126, 34
               

               
Conread position:
               
255-407
               

               
Cow position:
               
chr5:50637940-50637793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
138, 77
               

               
Conread position:
               
256-407
               

               
Cow position:
               
chr5:52644962-52645112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
258-407
               

               
Cow position:
               
chr5:31481264-31481113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
258-407
               

               
Cow position:
               
chr5:55929060-55928908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
258-407
               

               
Cow position:
               
chr5:65883656-65883806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
128, 0
               

               
Conread position:
               
263-407
               

               
Cow position:
               
chr5:57561634-57561487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
111, 133
               

               
Conread position:
               
266-403
               

               
Cow position:
               
chr5:31918750-31918616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
276-407
               

               
Cow position:
               
chr5:16509204-16509063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
305-406
               

               
Cow position:
               
chr5:21964358-21964256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
103
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
1e-20
               

               
Alignm gaps (pig, cow):
               
69, 0
               
Show alignments to all cow chromosomes.