Cow genome map
| Conread name: | Pla1-C0000936_N20 |
| Conread position: | 1-357 |
| Cow position: | chr1:67009275-67008906 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 265 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 101, 50 |
| Conread position: | 1-377 |
| Cow position: | chr1:63260782-63260395 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 371 |
| Conread position: | 1-377 |
| Cow position: | chr1:89766826-89766432 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 276 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 110, 301 |
| Conread position: | 1-383 |
| Cow position: | chr1:85028419-85028818 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 94 |
| Conread position: | 1-383 |
| Cow position: | chr1:85865254-85865643 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 271 |
| Conread position: | 2-329 |
| Cow position: | chr1:82091612-82091955 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 179 |
| Conread position: | 2-361 |
| Cow position: | chr1:101792631-101792261 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 99 |
| Conread position: | 2-375 |
| Cow position: | chr1:73443166-73442769 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 2-377 |
| Cow position: | chr1:58419380-58419785 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 2-377 |
| Cow position: | chr1:78795283-78794883 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 274 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 118, 56 |
| Conread position: | 2-377 |
| Cow position: | chr1:80184282-80183886 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 90 |
| Conread position: | 2-377 |
| Cow position: | chr1:101776136-101776517 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 266 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 137, 33 |
| Conread position: | 2-381 |
| Cow position: | chr1:22728505-22728904 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 183 |
| Conread position: | 2-381 |
| Cow position: | chr1:38687932-38688331 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 384 |
| Conread position: | 2-381 |
| Cow position: | chr1:57576308-57575912 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 284 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 54, 15 |
| Conread position: | 2-382 |
| Cow position: | chr1:22637934-22637542 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 41 |
| Conread position: | 2-382 |
| Cow position: | chr1:44154730-44155119 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 95 |
| Conread position: | 2-383 |
| Cow position: | chr1:15333372-15333736 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 269 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 150, 23 |
| Conread position: | 2-383 |
| Cow position: | chr1:58340632-58341032 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 278 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 150, 132 |
| Conread position: | 2-383 |
| Cow position: | chr1:97075785-97075378 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 349 |
| Conread position: | 3-283 |
| Cow position: | chr1:56476848-56477136 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 130, 21 |
| Conread position: | 4-382 |
| Cow position: | chr1:63049285-63049684 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 336 |
| Conread position: | 5-205 |
| Cow position: | chr1:40292434-40292231 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 146 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 148, 98 |
| Conread position: | 8-377 |
| Cow position: | chr1:36613823-36613422 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 82 |
| Conread position: | 8-383 |
| Cow position: | chr1:99224289-99223891 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 11-309 |
| Cow position: | chr1:91799518-91799201 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 57 |
| Conread position: | 11-383 |
| Cow position: | chr1:81859748-81859372 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 92 |
| Conread position: | 13-375 |
| Cow position: | chr1:35768918-35769294 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 274 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 14, 55 |
| Conread position: | 15-282 |
| Cow position: | chr1:43650182-43649915 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 204 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 87, 120 |
| Conread position: | 16-381 |
| Cow position: | chr1:51983075-51983440 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 96 |
| Conread position: | 19-337 |
| Cow position: | chr1:37646799-37646459 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 167 |
| Conread position: | 19-381 |
| Cow position: | chr1:41004891-41004510 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 314 |
| Conread position: | 24-343 |
| Cow position: | chr1:4368606-4368266 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 26-361 |
| Cow position: | chr1:3963102-3963455 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 157 |
| Conread position: | 32-381 |
| Cow position: | chr1:64678196-64678554 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 183 |
| Conread position: | 42-277 |
| Cow position: | chr1:61742928-61742688 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 38, 113 |
| Conread position: | 42-303 |
| Cow position: | chr1:76860277-76859994 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 35, 62 |
| Conread position: | 42-377 |
| Cow position: | chr1:31341558-31341201 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 48-377 |
| Cow position: | chr1:58067202-58066853 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 244 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 104, 135 |
| Conread position: | 53-383 |
| Cow position: | chr1:99136921-99136572 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 80 |
| Conread position: | 61-377 |
| Cow position: | chr1:6462834-6462498 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 236 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 91, 14 |
| Conread position: | 79-373 |
| Cow position: | chr1:63391238-63390925 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 221 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 73, 241 |
| Conread position: | 103-383 |
| Cow position: | chr1:71946806-71946517 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 49, 84 |
| Conread position: | 103-383 |
| Cow position: | chr1:89834803-89835090 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 214 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 72, 49 |
| Conread position: | 108-369 |
| Cow position: | chr1:54258135-54258412 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 202 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 44, 76 |
| Conread position: | 147-383 |
| Cow position: | chr1:6760404-6760159 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 59, 26 |
| Conread position: | 149-380 |
| Cow position: | chr1:3035375-3035141 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 62, 95 |
| Conread position: | 150-375 |
| Cow position: | chr1:58191695-58191461 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 56, 23 |
| Conread position: | 150-379 |
| Cow position: | chr1:41138737-41138500 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 11 |
| Conread position: | 150-384 |
| Cow position: | chr1:54484675-54484927 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 8, 24 |
| Conread position: | 153-353 |
| Cow position: | chr1:52384662-52384450 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 54, 20 |
| Conread position: | 153-371 |
| Cow position: | chr1:8349689-8349464 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 53, 107 |
| Conread position: | 153-383 |
| Cow position: | chr1:46218199-46218440 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 53, 218 |
| Conread position: | 154-377 |
| Cow position: | chr1:79632477-79632244 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 50, 19 |
| Conread position: | 154-381 |
| Cow position: | chr1:12222985-12222752 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 53, 18 |
| Conread position: | 168-377 |
| Cow position: | chr1:76938364-76938144 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 171 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 168-381 |
| Cow position: | chr1:25183756-25183982 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 168-383 |
| Cow position: | chr1:42869518-42869297 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 38, 133 |
| Conread position: | 169-350 |
| Cow position: | chr1:98412585-98412767 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 175-377 |
| Cow position: | chr1:35491936-35491729 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 31, 196 |
Show alignments to all cow chromosomes.