Cow genome map

Conread name: Pla1-C0000936_N20

Conread position: 1-346
Cow position: chr10:54469951-54469592 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 177

Conread position: 1-357
Cow position: chr10:10046605-10046246 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 269
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 151, 55

Conread position: 1-357
Cow position: chr10:46195225-46195594 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 55

Conread position: 1-375
Cow position: chr10:42346995-42346605 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 45

Conread position: 1-377
Cow position: chr10:21656853-21657242 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 111

Conread position: 1-377
Cow position: chr10:56106464-56106860 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 183

Conread position: 1-379
Cow position: chr10:6012599-6012211 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 173

Conread position: 1-381
Cow position: chr10:29091169-29090776 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 175

Conread position: 1-381
Cow position: chr10:29628531-29628124 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 0

Conread position: 1-383
Cow position: chr10:37913726-37913356 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 38

Conread position: 2-275
Cow position: chr10:57460731-57461017 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 210
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 150, 101

Conread position: 2-340
Cow position: chr10:40255988-40256318 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 249
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 204, 101

Conread position: 2-344
Cow position: chr10:1723357-1723692 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 245
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 253, 162

Conread position: 2-352
Cow position: chr10:6243010-6242647 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 95

Conread position: 2-354
Cow position: chr10:47773163-47773533 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 37

Conread position: 2-357
Cow position: chr10:19372893-19372526 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 0

Conread position: 2-361
Cow position: chr10:41626034-41626414 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 15

Conread position: 2-361
Cow position: chr10:53908281-53907912 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 126

Conread position: 2-375
Cow position: chr10:17221933-17221539 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 182

Conread position: 2-380
Cow position: chr10:30456432-30456031 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 136

Conread position: 2-381
Cow position: chr10:19294885-19294486 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 182

Conread position: 2-381
Cow position: chr10:22320961-22321345 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 276
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 128, 107

Conread position: 2-381
Cow position: chr10:46664347-46664747 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 348

Conread position: 2-383
Cow position: chr10:8459949-8460354 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 185

Conread position: 2-383
Cow position: chr10:10082339-10081941 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 280
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 150, 36

Conread position: 2-383
Cow position: chr10:23412788-23413185 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 177

Conread position: 2-383
Cow position: chr10:31669998-31670392 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 41

Conread position: 2-383
Cow position: chr10:40270067-40270434 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 101

Conread position: 2-383
Cow position: chr10:42124392-42123989 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 283
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 27, 172

Conread position: 2-383
Cow position: chr10:51559143-51559545 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 344

Conread position: 2-383
Cow position: chr10:52151948-52152351 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 0

Conread position: 3-381
Cow position: chr10:31182437-31182056 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 150

Conread position: 3-383
Cow position: chr10:18041606-18042013 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 180

Conread position: 3-383
Cow position: chr10:20735138-20735536 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 22

Conread position: 4-382
Cow position: chr10:34660784-34660392 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 29

Conread position: 5-377
Cow position: chr10:30281622-30282015 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 29

Conread position: 11-374
Cow position: chr10:31527444-31527813 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 259
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 115, 92

Conread position: 11-384
Cow position: chr10:33215235-33215626 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 40

Conread position: 12-362
Cow position: chr10:14788083-14787729 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 244
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 120, 91

Conread position: 13-360
Cow position: chr10:20446542-20446905 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 171

Conread position: 16-381
Cow position: chr10:13311169-13311558 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 174

Conread position: 18-381
Cow position: chr10:44680962-44681344 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 166

Conread position: 33-355
Cow position: chr10:6529660-6529999 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 6

Conread position: 33-383
Cow position: chr10:20133084-20132700 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 272
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 38, 70

Conread position: 34-383
Cow position: chr10:46829332-46829701 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 265
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 93, 217

Conread position: 35-382
Cow position: chr10:38943713-38944086 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 33

Conread position: 36-383
Cow position: chr10:22390058-22390413 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 67

Conread position: 38-381
Cow position: chr10:48462876-48462516 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 8

Conread position: 42-383
Cow position: chr10:4586893-4586534 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 293

Conread position: 43-354
Cow position: chr10:29339927-29339598 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 231
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 96, 44

Conread position: 48-383
Cow position: chr10:59664485-59664142 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 126

Conread position: 53-383
Cow position: chr10:29322361-29322705 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 247
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 62, 132

Conread position: 54-381
Cow position: chr10:15927128-15926780 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 243
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 98, 323

Conread position: 65-377
Cow position: chr10:54141376-54141706 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 301

Conread position: 79-371
Cow position: chr10:59588669-59588351 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 233
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 60, 22

Conread position: 79-383
Cow position: chr10:41396969-41397308 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 239
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 36, 0

Conread position: 104-371
Cow position: chr10:55622596-55622310 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 205
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 53, 0

Conread position: 104-383
Cow position: chr10:16740536-16740229 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 209
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 48, 217

Conread position: 115-381
Cow position: chr10:15818252-15817970 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 207
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 37, 147

Conread position: 149-291
Cow position: chr10:13765817-13765668 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 116
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 57, 24

Conread position: 149-383
Cow position: chr10:61588675-61588434 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 181
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 56, 24

Conread position: 150-377
Cow position: chr10:1427625-1427862 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 175
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 56, 162

Conread position: 150-379
Cow position: chr10:52046451-52046685 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 179
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 57, 23

Conread position: 150-383
Cow position: chr10:5264287-5264528 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 187
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 57, 12

Conread position: 153-381
Cow position: chr10:22471901-22472141 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 173
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 36, 20

Conread position: 162-383
Cow position: chr10:27541121-27541349 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 157
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 41, 11

Conread position: 163-383
Cow position: chr10:32393619-32393849 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 159
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 43, 131

Conread position: 168-381
Cow position: chr10:24870766-24870987 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 169
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 38, 203

Conread position: 168-382
Cow position: chr10:36001808-36002028 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 167
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 36, 145

Show alignments to all cow chromosomes.