Cow genome map
Conread name: | Pla1-C0000936_N20 |
Conread position: | 1-346 |
Cow position: | chr10:54469951-54469592 (view UCSC Genome Browser custom track) |
Alignm length: | 361 |
Alignm identity: | 273 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 141, 177 |
Conread position: | 1-357 |
Cow position: | chr10:10046605-10046246 (view UCSC Genome Browser custom track) |
Alignm length: | 376 |
Alignm identity: | 269 |
Alignm E-value: | 1.4013e-45 |
Alignm gaps (pig, cow): | 151, 55 |
Conread position: | 1-357 |
Cow position: | chr10:46195225-46195594 (view UCSC Genome Browser custom track) |
Alignm length: | 374 |
Alignm identity: | 291 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 151, 55 |
Conread position: | 1-375 |
Cow position: | chr10:42346995-42346605 (view UCSC Genome Browser custom track) |
Alignm length: | 404 |
Alignm identity: | 294 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 151, 45 |
Conread position: | 1-377 |
Cow position: | chr10:21656853-21657242 (view UCSC Genome Browser custom track) |
Alignm length: | 398 |
Alignm identity: | 302 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 151, 111 |
Conread position: | 1-377 |
Cow position: | chr10:56106464-56106860 (view UCSC Genome Browser custom track) |
Alignm length: | 398 |
Alignm identity: | 281 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 151, 183 |
Conread position: | 1-379 |
Cow position: | chr10:6012599-6012211 (view UCSC Genome Browser custom track) |
Alignm length: | 391 |
Alignm identity: | 284 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 151, 173 |
Conread position: | 1-381 |
Cow position: | chr10:29091169-29090776 (view UCSC Genome Browser custom track) |
Alignm length: | 397 |
Alignm identity: | 277 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 133, 175 |
Conread position: | 1-381 |
Cow position: | chr10:29628531-29628124 (view UCSC Genome Browser custom track) |
Alignm length: | 408 |
Alignm identity: | 293 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 84, 0 |
Conread position: | 1-383 |
Cow position: | chr10:37913726-37913356 (view UCSC Genome Browser custom track) |
Alignm length: | 389 |
Alignm identity: | 272 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 120, 38 |
Conread position: | 2-275 |
Cow position: | chr10:57460731-57461017 (view UCSC Genome Browser custom track) |
Alignm length: | 288 |
Alignm identity: | 210 |
Alignm E-value: | 2.94273e-44 |
Alignm gaps (pig, cow): | 150, 101 |
Conread position: | 2-340 |
Cow position: | chr10:40255988-40256318 (view UCSC Genome Browser custom track) |
Alignm length: | 349 |
Alignm identity: | 249 |
Alignm E-value: | 2.94273e-44 |
Alignm gaps (pig, cow): | 204, 101 |
Conread position: | 2-344 |
Cow position: | chr10:1723357-1723692 (view UCSC Genome Browser custom track) |
Alignm length: | 350 |
Alignm identity: | 245 |
Alignm E-value: | 9.80909e-45 |
Alignm gaps (pig, cow): | 253, 162 |
Conread position: | 2-352 |
Cow position: | chr10:6243010-6242647 (view UCSC Genome Browser custom track) |
Alignm length: | 371 |
Alignm identity: | 281 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 149, 95 |
Conread position: | 2-354 |
Cow position: | chr10:47773163-47773533 (view UCSC Genome Browser custom track) |
Alignm length: | 375 |
Alignm identity: | 266 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 94, 37 |
Conread position: | 2-357 |
Cow position: | chr10:19372893-19372526 (view UCSC Genome Browser custom track) |
Alignm length: | 368 |
Alignm identity: | 273 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 156, 0 |
Conread position: | 2-361 |
Cow position: | chr10:41626034-41626414 (view UCSC Genome Browser custom track) |
Alignm length: | 385 |
Alignm identity: | 281 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 147, 15 |
Conread position: | 2-361 |
Cow position: | chr10:53908281-53907912 (view UCSC Genome Browser custom track) |
Alignm length: | 381 |
Alignm identity: | 276 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 149, 126 |
Conread position: | 2-375 |
Cow position: | chr10:17221933-17221539 (view UCSC Genome Browser custom track) |
Alignm length: | 396 |
Alignm identity: | 282 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 150, 182 |
Conread position: | 2-380 |
Cow position: | chr10:30456432-30456031 (view UCSC Genome Browser custom track) |
Alignm length: | 406 |
Alignm identity: | 293 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 45, 136 |
Conread position: | 2-381 |
Cow position: | chr10:19294885-19294486 (view UCSC Genome Browser custom track) |
Alignm length: | 403 |
Alignm identity: | 287 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 150, 182 |
Conread position: | 2-381 |
Cow position: | chr10:22320961-22321345 (view UCSC Genome Browser custom track) |
Alignm length: | 399 |
Alignm identity: | 276 |
Alignm E-value: | 2.94273e-44 |
Alignm gaps (pig, cow): | 128, 107 |
Conread position: | 2-381 |
Cow position: | chr10:46664347-46664747 (view UCSC Genome Browser custom track) |
Alignm length: | 402 |
Alignm identity: | 294 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 150, 348 |
Conread position: | 2-383 |
Cow position: | chr10:8459949-8460354 (view UCSC Genome Browser custom track) |
Alignm length: | 407 |
Alignm identity: | 291 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 100, 185 |
Conread position: | 2-383 |
Cow position: | chr10:10082339-10081941 (view UCSC Genome Browser custom track) |
Alignm length: | 407 |
Alignm identity: | 280 |
Alignm E-value: | 2e-40 |
Alignm gaps (pig, cow): | 150, 36 |
Conread position: | 2-383 |
Cow position: | chr10:23412788-23413185 (view UCSC Genome Browser custom track) |
Alignm length: | 399 |
Alignm identity: | 287 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 150, 177 |
Conread position: | 2-383 |
Cow position: | chr10:31669998-31670392 (view UCSC Genome Browser custom track) |
Alignm length: | 397 |
Alignm identity: | 280 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 151, 41 |
Conread position: | 2-383 |
Cow position: | chr10:40270067-40270434 (view UCSC Genome Browser custom track) |
Alignm length: | 392 |
Alignm identity: | 276 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 204, 101 |
Conread position: | 2-383 |
Cow position: | chr10:42124392-42123989 (view UCSC Genome Browser custom track) |
Alignm length: | 410 |
Alignm identity: | 283 |
Alignm E-value: | 2.99878e-43 |
Alignm gaps (pig, cow): | 27, 172 |
Conread position: | 2-383 |
Cow position: | chr10:51559143-51559545 (view UCSC Genome Browser custom track) |
Alignm length: | 404 |
Alignm identity: | 293 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 167, 344 |
Conread position: | 2-383 |
Cow position: | chr10:52151948-52152351 (view UCSC Genome Browser custom track) |
Alignm length: | 404 |
Alignm identity: | 299 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 150, 0 |
Conread position: | 3-381 |
Cow position: | chr10:31182437-31182056 (view UCSC Genome Browser custom track) |
Alignm length: | 391 |
Alignm identity: | 285 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 203, 150 |
Conread position: | 3-383 |
Cow position: | chr10:18041606-18042013 (view UCSC Genome Browser custom track) |
Alignm length: | 409 |
Alignm identity: | 290 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 150, 180 |
Conread position: | 3-383 |
Cow position: | chr10:20735138-20735536 (view UCSC Genome Browser custom track) |
Alignm length: | 403 |
Alignm identity: | 287 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 110, 22 |
Conread position: | 4-382 |
Cow position: | chr10:34660784-34660392 (view UCSC Genome Browser custom track) |
Alignm length: | 398 |
Alignm identity: | 292 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 148, 29 |
Conread position: | 5-377 |
Cow position: | chr10:30281622-30282015 (view UCSC Genome Browser custom track) |
Alignm length: | 401 |
Alignm identity: | 291 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 52, 29 |
Conread position: | 11-374 |
Cow position: | chr10:31527444-31527813 (view UCSC Genome Browser custom track) |
Alignm length: | 377 |
Alignm identity: | 259 |
Alignm E-value: | 2.99878e-43 |
Alignm gaps (pig, cow): | 115, 92 |
Conread position: | 11-384 |
Cow position: | chr10:33215235-33215626 (view UCSC Genome Browser custom track) |
Alignm length: | 397 |
Alignm identity: | 291 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 141, 40 |
Conread position: | 12-362 |
Cow position: | chr10:14788083-14787729 (view UCSC Genome Browser custom track) |
Alignm length: | 362 |
Alignm identity: | 244 |
Alignm E-value: | 4e-36 |
Alignm gaps (pig, cow): | 120, 91 |
Conread position: | 13-360 |
Cow position: | chr10:20446542-20446905 (view UCSC Genome Browser custom track) |
Alignm length: | 365 |
Alignm identity: | 273 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 139, 171 |
Conread position: | 16-381 |
Cow position: | chr10:13311169-13311558 (view UCSC Genome Browser custom track) |
Alignm length: | 391 |
Alignm identity: | 279 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 132, 174 |
Conread position: | 18-381 |
Cow position: | chr10:44680962-44681344 (view UCSC Genome Browser custom track) |
Alignm length: | 384 |
Alignm identity: | 282 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 134, 166 |
Conread position: | 33-355 |
Cow position: | chr10:6529660-6529999 (view UCSC Genome Browser custom track) |
Alignm length: | 341 |
Alignm identity: | 260 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 119, 6 |
Conread position: | 33-383 |
Cow position: | chr10:20133084-20132700 (view UCSC Genome Browser custom track) |
Alignm length: | 388 |
Alignm identity: | 272 |
Alignm E-value: | 7.00005e-41 |
Alignm gaps (pig, cow): | 38, 70 |
Conread position: | 34-383 |
Cow position: | chr10:46829332-46829701 (view UCSC Genome Browser custom track) |
Alignm length: | 374 |
Alignm identity: | 265 |
Alignm E-value: | 2.8026e-45 |
Alignm gaps (pig, cow): | 93, 217 |
Conread position: | 35-382 |
Cow position: | chr10:38943713-38944086 (view UCSC Genome Browser custom track) |
Alignm length: | 375 |
Alignm identity: | 268 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 5, 33 |
Conread position: | 36-383 |
Cow position: | chr10:22390058-22390413 (view UCSC Genome Browser custom track) |
Alignm length: | 367 |
Alignm identity: | 271 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 116, 67 |
Conread position: | 38-381 |
Cow position: | chr10:48462876-48462516 (view UCSC Genome Browser custom track) |
Alignm length: | 368 |
Alignm identity: | 274 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 113, 8 |
Conread position: | 42-383 |
Cow position: | chr10:4586893-4586534 (view UCSC Genome Browser custom track) |
Alignm length: | 361 |
Alignm identity: | 257 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 110, 293 |
Conread position: | 43-354 |
Cow position: | chr10:29339927-29339598 (view UCSC Genome Browser custom track) |
Alignm length: | 336 |
Alignm identity: | 231 |
Alignm E-value: | 7e-31 |
Alignm gaps (pig, cow): | 96, 44 |
Conread position: | 48-383 |
Cow position: | chr10:59664485-59664142 (view UCSC Genome Browser custom track) |
Alignm length: | 352 |
Alignm identity: | 258 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 104, 126 |
Conread position: | 53-383 |
Cow position: | chr10:29322361-29322705 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 247 |
Alignm E-value: | 2e-40 |
Alignm gaps (pig, cow): | 62, 132 |
Conread position: | 54-381 |
Cow position: | chr10:15927128-15926780 (view UCSC Genome Browser custom track) |
Alignm length: | 351 |
Alignm identity: | 243 |
Alignm E-value: | 5e-38 |
Alignm gaps (pig, cow): | 98, 323 |
Conread position: | 65-377 |
Cow position: | chr10:54141376-54141706 (view UCSC Genome Browser custom track) |
Alignm length: | 333 |
Alignm identity: | 249 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 87, 301 |
Conread position: | 79-371 |
Cow position: | chr10:59588669-59588351 (view UCSC Genome Browser custom track) |
Alignm length: | 324 |
Alignm identity: | 233 |
Alignm E-value: | 1e-35 |
Alignm gaps (pig, cow): | 60, 22 |
Conread position: | 79-383 |
Cow position: | chr10:41396969-41397308 (view UCSC Genome Browser custom track) |
Alignm length: | 340 |
Alignm identity: | 239 |
Alignm E-value: | 1e-33 |
Alignm gaps (pig, cow): | 36, 0 |
Conread position: | 104-371 |
Cow position: | chr10:55622596-55622310 (view UCSC Genome Browser custom track) |
Alignm length: | 287 |
Alignm identity: | 205 |
Alignm E-value: | 1e-36 |
Alignm gaps (pig, cow): | 53, 0 |
Conread position: | 104-383 |
Cow position: | chr10:16740536-16740229 (view UCSC Genome Browser custom track) |
Alignm length: | 309 |
Alignm identity: | 209 |
Alignm E-value: | 3e-24 |
Alignm gaps (pig, cow): | 48, 217 |
Conread position: | 115-381 |
Cow position: | chr10:15818252-15817970 (view UCSC Genome Browser custom track) |
Alignm length: | 284 |
Alignm identity: | 207 |
Alignm E-value: | 1.99993e-41 |
Alignm gaps (pig, cow): | 37, 147 |
Conread position: | 149-291 |
Cow position: | chr10:13765817-13765668 (view UCSC Genome Browser custom track) |
Alignm length: | 151 |
Alignm identity: | 116 |
Alignm E-value: | 9e-23 |
Alignm gaps (pig, cow): | 57, 24 |
Conread position: | 149-383 |
Cow position: | chr10:61588675-61588434 (view UCSC Genome Browser custom track) |
Alignm length: | 246 |
Alignm identity: | 181 |
Alignm E-value: | 4e-36 |
Alignm gaps (pig, cow): | 56, 24 |
Conread position: | 150-377 |
Cow position: | chr10:1427625-1427862 (view UCSC Genome Browser custom track) |
Alignm length: | 240 |
Alignm identity: | 175 |
Alignm E-value: | 3e-33 |
Alignm gaps (pig, cow): | 56, 162 |
Conread position: | 150-379 |
Cow position: | chr10:52046451-52046685 (view UCSC Genome Browser custom track) |
Alignm length: | 240 |
Alignm identity: | 179 |
Alignm E-value: | 4e-36 |
Alignm gaps (pig, cow): | 57, 23 |
Conread position: | 150-383 |
Cow position: | chr10:5264287-5264528 (view UCSC Genome Browser custom track) |
Alignm length: | 244 |
Alignm identity: | 187 |
Alignm E-value: | 9.80909e-45 |
Alignm gaps (pig, cow): | 57, 12 |
Conread position: | 153-381 |
Cow position: | chr10:22471901-22472141 (view UCSC Genome Browser custom track) |
Alignm length: | 243 |
Alignm identity: | 173 |
Alignm E-value: | 2e-28 |
Alignm gaps (pig, cow): | 36, 20 |
Conread position: | 162-383 |
Cow position: | chr10:27541121-27541349 (view UCSC Genome Browser custom track) |
Alignm length: | 230 |
Alignm identity: | 157 |
Alignm E-value: | 3e-24 |
Alignm gaps (pig, cow): | 41, 11 |
Conread position: | 163-383 |
Cow position: | chr10:32393619-32393849 (view UCSC Genome Browser custom track) |
Alignm length: | 232 |
Alignm identity: | 159 |
Alignm E-value: | 9e-23 |
Alignm gaps (pig, cow): | 43, 131 |
Conread position: | 168-381 |
Cow position: | chr10:24870766-24870987 (view UCSC Genome Browser custom track) |
Alignm length: | 226 |
Alignm identity: | 169 |
Alignm E-value: | 9e-33 |
Alignm gaps (pig, cow): | 38, 203 |
Conread position: | 168-382 |
Cow position: | chr10:36001808-36002028 (view UCSC Genome Browser custom track) |
Alignm length: | 225 |
Alignm identity: | 167 |
Alignm E-value: | 3e-33 |
Alignm gaps (pig, cow): | 36, 145 |
Show alignments to all cow chromosomes.