Cow genome map

Conread name: Pla1-C0000936_N20

Conread position: 1-295
Cow position: chr16:13713437-13713133 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 220
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 125, 24

Conread position: 1-314
Cow position: chr16:12087197-12086875 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 238
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 150, 63

Conread position: 1-377
Cow position: chr16:51578948-51578574 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 254, 96

Conread position: 1-381
Cow position: chr16:31122805-31122399 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 183

Conread position: 1-381
Cow position: chr16:33704255-33704651 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 183

Conread position: 1-381
Cow position: chr16:42079388-42078992 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 43

Conread position: 1-381
Cow position: chr16:45731922-45731525 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 324

Conread position: 1-381
Cow position: chr16:48370500-48370101 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 314

Conread position: 1-383
Cow position: chr16:49768768-49768365 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 183

Conread position: 2-371
Cow position: chr16:5726383-5726763 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 273
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 150, 27

Conread position: 2-375
Cow position: chr16:42219720-42219329 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 64

Conread position: 2-375
Cow position: chr16:49169908-49169539 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 265
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 146, 81

Conread position: 2-377
Cow position: chr16:7917252-7917646 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 319

Conread position: 2-377
Cow position: chr16:17143256-17143651 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 101

Conread position: 2-379
Cow position: chr16:50712457-50712059 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 182

Conread position: 2-381
Cow position: chr16:25169843-25170240 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 182

Conread position: 2-381
Cow position: chr16:39384857-39385251 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 88

Conread position: 2-381
Cow position: chr16:43513023-43513417 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 64

Conread position: 2-381
Cow position: chr16:49142088-49141713 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 113

Conread position: 2-383
Cow position: chr16:48519907-48520309 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 127

Conread position: 2-388
Cow position: chr16:4972575-4972168 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 182

Conread position: 3-375
Cow position: chr16:29158583-29158972 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 181

Conread position: 3-383
Cow position: chr16:26500613-26501012 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 345

Conread position: 4-389
Cow position: chr16:18141872-18141474 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 379

Conread position: 8-395
Cow position: chr16:19757331-19756927 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 336

Conread position: 11-211
Cow position: chr16:29538833-29538631 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 153
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 26, 178

Conread position: 15-361
Cow position: chr16:4699492-4699140 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 171

Conread position: 22-380
Cow position: chr16:40333851-40333476 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 283

Conread position: 25-381
Cow position: chr16:11105028-11105399 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 155

Conread position: 27-381
Cow position: chr16:4058841-4059209 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 250

Conread position: 28-303
Cow position: chr16:33235761-33235466 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 158

Conread position: 31-258
Cow position: chr16:5363355-5363578 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 170
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 175, 98

Conread position: 31-346
Cow position: chr16:27706736-27706403 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 246
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 121, 40

Conread position: 31-375
Cow position: chr16:19643376-19643737 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 89

Conread position: 37-262
Cow position: chr16:45785155-45785396 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 175
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 115, 53

Conread position: 42-382
Cow position: chr16:23475583-23475944 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 0

Conread position: 53-379
Cow position: chr16:48398742-48398402 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 132

Conread position: 59-381
Cow position: chr16:52169584-52169912 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 244
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 12, 64

Conread position: 69-383
Cow position: chr16:54578694-54579019 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 48

Conread position: 72-361
Cow position: chr16:42073440-42073130 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 221
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 80, 0

Conread position: 89-381
Cow position: chr16:56231358-56231673 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 223
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 14, 0

Conread position: 90-377
Cow position: chr16:33102426-33102118 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 214
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 62, 94

Conread position: 91-354
Cow position: chr16:17288332-17288620 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 215
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 61, 18

Conread position: 118-380
Cow position: chr16:34210848-34210564 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 197
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 32, 0

Conread position: 125-381
Cow position: chr16:16425032-16424754 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 204
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 27, 60

Conread position: 149-381
Cow position: chr16:30143606-30143363 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 179
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 57, 24

Conread position: 150-383
Cow position: chr16:31159961-31159726 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 179
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 54, 23

Conread position: 153-381
Cow position: chr16:24445872-24446110 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 163
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 53, 158

Conread position: 162-383
Cow position: chr16:23823391-23823169 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 162
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 44, 92

Conread position: 166-346
Cow position: chr16:15188823-15189013 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 148
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 40, 0

Conread position: 167-381
Cow position: chr16:7665252-7665481 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 168
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 38, 0

Conread position: 168-383
Cow position: chr16:8438987-8438773 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 161
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 87, 46

Conread position: 169-383
Cow position: chr16:22717237-22717450 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 153
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 128, 75

Conread position: 244-381
Cow position: chr16:5292681-5292821 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 112
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 16, 0

Show alignments to all cow chromosomes.