Cow genome map
Conread name: | Pla1-C0000936_N20 |
Conread position: | 1-295 |
Cow position: | chr16:13713437-13713133 (view UCSC Genome Browser custom track) |
Alignm length: | 309 |
Alignm identity: | 220 |
Alignm E-value: | 2e-40 |
Alignm gaps (pig, cow): | 125, 24 |
Conread position: | 1-314 |
Cow position: | chr16:12087197-12086875 (view UCSC Genome Browser custom track) |
Alignm length: | 332 |
Alignm identity: | 238 |
Alignm E-value: | 7.00649e-44 |
Alignm gaps (pig, cow): | 150, 63 |
Conread position: | 1-377 |
Cow position: | chr16:51578948-51578574 (view UCSC Genome Browser custom track) |
Alignm length: | 380 |
Alignm identity: | 292 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 254, 96 |
Conread position: | 1-381 |
Cow position: | chr16:31122805-31122399 (view UCSC Genome Browser custom track) |
Alignm length: | 408 |
Alignm identity: | 319 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 152, 183 |
Conread position: | 1-381 |
Cow position: | chr16:33704255-33704651 (view UCSC Genome Browser custom track) |
Alignm length: | 406 |
Alignm identity: | 303 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 151, 183 |
Conread position: | 1-381 |
Cow position: | chr16:42079388-42078992 (view UCSC Genome Browser custom track) |
Alignm length: | 402 |
Alignm identity: | 305 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 29, 43 |
Conread position: | 1-381 |
Cow position: | chr16:45731922-45731525 (view UCSC Genome Browser custom track) |
Alignm length: | 401 |
Alignm identity: | 303 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 324 |
Conread position: | 1-381 |
Cow position: | chr16:48370500-48370101 (view UCSC Genome Browser custom track) |
Alignm length: | 404 |
Alignm identity: | 295 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 176, 314 |
Conread position: | 1-383 |
Cow position: | chr16:49768768-49768365 (view UCSC Genome Browser custom track) |
Alignm length: | 405 |
Alignm identity: | 282 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 151, 183 |
Conread position: | 2-371 |
Cow position: | chr16:5726383-5726763 (view UCSC Genome Browser custom track) |
Alignm length: | 390 |
Alignm identity: | 273 |
Alignm E-value: | 8.40779e-45 |
Alignm gaps (pig, cow): | 150, 27 |
Conread position: | 2-375 |
Cow position: | chr16:42219720-42219329 (view UCSC Genome Browser custom track) |
Alignm length: | 395 |
Alignm identity: | 275 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 148, 64 |
Conread position: | 2-375 |
Cow position: | chr16:49169908-49169539 (view UCSC Genome Browser custom track) |
Alignm length: | 384 |
Alignm identity: | 265 |
Alignm E-value: | 2.8026e-45 |
Alignm gaps (pig, cow): | 146, 81 |
Conread position: | 2-377 |
Cow position: | chr16:7917252-7917646 (view UCSC Genome Browser custom track) |
Alignm length: | 396 |
Alignm identity: | 290 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 149, 319 |
Conread position: | 2-377 |
Cow position: | chr16:17143256-17143651 (view UCSC Genome Browser custom track) |
Alignm length: | 397 |
Alignm identity: | 279 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 166, 101 |
Conread position: | 2-379 |
Cow position: | chr16:50712457-50712059 (view UCSC Genome Browser custom track) |
Alignm length: | 400 |
Alignm identity: | 290 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 148, 182 |
Conread position: | 2-381 |
Cow position: | chr16:25169843-25170240 (view UCSC Genome Browser custom track) |
Alignm length: | 399 |
Alignm identity: | 295 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 182 |
Conread position: | 2-381 |
Cow position: | chr16:39384857-39385251 (view UCSC Genome Browser custom track) |
Alignm length: | 402 |
Alignm identity: | 291 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 148, 88 |
Conread position: | 2-381 |
Cow position: | chr16:43513023-43513417 (view UCSC Genome Browser custom track) |
Alignm length: | 403 |
Alignm identity: | 283 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 150, 64 |
Conread position: | 2-381 |
Cow position: | chr16:49142088-49141713 (view UCSC Genome Browser custom track) |
Alignm length: | 391 |
Alignm identity: | 286 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 204, 113 |
Conread position: | 2-383 |
Cow position: | chr16:48519907-48520309 (view UCSC Genome Browser custom track) |
Alignm length: | 407 |
Alignm identity: | 291 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 16, 127 |
Conread position: | 2-388 |
Cow position: | chr16:4972575-4972168 (view UCSC Genome Browser custom track) |
Alignm length: | 409 |
Alignm identity: | 291 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 149, 182 |
Conread position: | 3-375 |
Cow position: | chr16:29158583-29158972 (view UCSC Genome Browser custom track) |
Alignm length: | 394 |
Alignm identity: | 288 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 149, 181 |
Conread position: | 3-383 |
Cow position: | chr16:26500613-26501012 (view UCSC Genome Browser custom track) |
Alignm length: | 401 |
Alignm identity: | 290 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 95, 345 |
Conread position: | 4-389 |
Cow position: | chr16:18141872-18141474 (view UCSC Genome Browser custom track) |
Alignm length: | 401 |
Alignm identity: | 297 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 154, 379 |
Conread position: | 8-395 |
Cow position: | chr16:19757331-19756927 (view UCSC Genome Browser custom track) |
Alignm length: | 409 |
Alignm identity: | 295 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 144, 336 |
Conread position: | 11-211 |
Cow position: | chr16:29538833-29538631 (view UCSC Genome Browser custom track) |
Alignm length: | 204 |
Alignm identity: | 153 |
Alignm E-value: | 1e-35 |
Alignm gaps (pig, cow): | 26, 178 |
Conread position: | 15-361 |
Cow position: | chr16:4699492-4699140 (view UCSC Genome Browser custom track) |
Alignm length: | 360 |
Alignm identity: | 256 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 171 |
Conread position: | 22-380 |
Cow position: | chr16:40333851-40333476 (view UCSC Genome Browser custom track) |
Alignm length: | 380 |
Alignm identity: | 276 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 130, 283 |
Conread position: | 25-381 |
Cow position: | chr16:11105028-11105399 (view UCSC Genome Browser custom track) |
Alignm length: | 375 |
Alignm identity: | 273 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 115, 155 |
Conread position: | 27-381 |
Cow position: | chr16:4058841-4059209 (view UCSC Genome Browser custom track) |
Alignm length: | 375 |
Alignm identity: | 270 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 125, 250 |
Conread position: | 28-303 |
Cow position: | chr16:33235761-33235466 (view UCSC Genome Browser custom track) |
Alignm length: | 297 |
Alignm identity: | 223 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 101, 158 |
Conread position: | 31-258 |
Cow position: | chr16:5363355-5363578 (view UCSC Genome Browser custom track) |
Alignm length: | 235 |
Alignm identity: | 170 |
Alignm E-value: | 5e-29 |
Alignm gaps (pig, cow): | 175, 98 |
Conread position: | 31-346 |
Cow position: | chr16:27706736-27706403 (view UCSC Genome Browser custom track) |
Alignm length: | 339 |
Alignm identity: | 246 |
Alignm E-value: | 8.40779e-45 |
Alignm gaps (pig, cow): | 121, 40 |
Conread position: | 31-375 |
Cow position: | chr16:19643376-19643737 (view UCSC Genome Browser custom track) |
Alignm length: | 371 |
Alignm identity: | 272 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 16, 89 |
Conread position: | 37-262 |
Cow position: | chr16:45785155-45785396 (view UCSC Genome Browser custom track) |
Alignm length: | 245 |
Alignm identity: | 175 |
Alignm E-value: | 1e-27 |
Alignm gaps (pig, cow): | 115, 53 |
Conread position: | 42-382 |
Cow position: | chr16:23475583-23475944 (view UCSC Genome Browser custom track) |
Alignm length: | 362 |
Alignm identity: | 255 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 110, 0 |
Conread position: | 53-379 |
Cow position: | chr16:48398742-48398402 (view UCSC Genome Browser custom track) |
Alignm length: | 346 |
Alignm identity: | 252 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 99, 132 |
Conread position: | 59-381 |
Cow position: | chr16:52169584-52169912 (view UCSC Genome Browser custom track) |
Alignm length: | 344 |
Alignm identity: | 244 |
Alignm E-value: | 4e-37 |
Alignm gaps (pig, cow): | 12, 64 |
Conread position: | 69-383 |
Cow position: | chr16:54578694-54579019 (view UCSC Genome Browser custom track) |
Alignm length: | 332 |
Alignm identity: | 243 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 77, 48 |
Conread position: | 72-361 |
Cow position: | chr16:42073440-42073130 (view UCSC Genome Browser custom track) |
Alignm length: | 311 |
Alignm identity: | 221 |
Alignm E-value: | 5e-40 |
Alignm gaps (pig, cow): | 80, 0 |
Conread position: | 89-381 |
Cow position: | chr16:56231358-56231673 (view UCSC Genome Browser custom track) |
Alignm length: | 316 |
Alignm identity: | 223 |
Alignm E-value: | 1e-38 |
Alignm gaps (pig, cow): | 14, 0 |
Conread position: | 90-377 |
Cow position: | chr16:33102426-33102118 (view UCSC Genome Browser custom track) |
Alignm length: | 310 |
Alignm identity: | 214 |
Alignm E-value: | 6e-32 |
Alignm gaps (pig, cow): | 62, 94 |
Conread position: | 91-354 |
Cow position: | chr16:17288332-17288620 (view UCSC Genome Browser custom track) |
Alignm length: | 292 |
Alignm identity: | 215 |
Alignm E-value: | 1e-36 |
Alignm gaps (pig, cow): | 61, 18 |
Conread position: | 118-380 |
Cow position: | chr16:34210848-34210564 (view UCSC Genome Browser custom track) |
Alignm length: | 285 |
Alignm identity: | 197 |
Alignm E-value: | 5e-30 |
Alignm gaps (pig, cow): | 32, 0 |
Conread position: | 125-381 |
Cow position: | chr16:16425032-16424754 (view UCSC Genome Browser custom track) |
Alignm length: | 280 |
Alignm identity: | 204 |
Alignm E-value: | 1e-36 |
Alignm gaps (pig, cow): | 27, 60 |
Conread position: | 149-381 |
Cow position: | chr16:30143606-30143363 (view UCSC Genome Browser custom track) |
Alignm length: | 245 |
Alignm identity: | 179 |
Alignm E-value: | 1e-35 |
Alignm gaps (pig, cow): | 57, 24 |
Conread position: | 150-383 |
Cow position: | chr16:31159961-31159726 (view UCSC Genome Browser custom track) |
Alignm length: | 244 |
Alignm identity: | 179 |
Alignm E-value: | 6e-32 |
Alignm gaps (pig, cow): | 54, 23 |
Conread position: | 153-381 |
Cow position: | chr16:24445872-24446110 (view UCSC Genome Browser custom track) |
Alignm length: | 241 |
Alignm identity: | 163 |
Alignm E-value: | 6e-21 |
Alignm gaps (pig, cow): | 53, 158 |
Conread position: | 162-383 |
Cow position: | chr16:23823391-23823169 (view UCSC Genome Browser custom track) |
Alignm length: | 230 |
Alignm identity: | 162 |
Alignm E-value: | 9e-25 |
Alignm gaps (pig, cow): | 44, 92 |
Conread position: | 166-346 |
Cow position: | chr16:15188823-15189013 (view UCSC Genome Browser custom track) |
Alignm length: | 191 |
Alignm identity: | 148 |
Alignm E-value: | 2e-33 |
Alignm gaps (pig, cow): | 40, 0 |
Conread position: | 167-381 |
Cow position: | chr16:7665252-7665481 (view UCSC Genome Browser custom track) |
Alignm length: | 230 |
Alignm identity: | 168 |
Alignm E-value: | 2e-32 |
Alignm gaps (pig, cow): | 38, 0 |
Conread position: | 168-383 |
Cow position: | chr16:8438987-8438773 (view UCSC Genome Browser custom track) |
Alignm length: | 223 |
Alignm identity: | 161 |
Alignm E-value: | 4e-27 |
Alignm gaps (pig, cow): | 87, 46 |
Conread position: | 169-383 |
Cow position: | chr16:22717237-22717450 (view UCSC Genome Browser custom track) |
Alignm length: | 218 |
Alignm identity: | 153 |
Alignm E-value: | 1e-26 |
Alignm gaps (pig, cow): | 128, 75 |
Conread position: | 244-381 |
Cow position: | chr16:5292681-5292821 (view UCSC Genome Browser custom track) |
Alignm length: | 141 |
Alignm identity: | 112 |
Alignm E-value: | 1e-28 |
Alignm gaps (pig, cow): | 16, 0 |
Show alignments to all cow chromosomes.