Cow genome map
| Conread name: | Pla1-C0000936_N20 |
| Conread position: | 1-275 |
| Cow position: | chr17:29810143-29810438 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 221 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 151, 96 |
| Conread position: | 1-377 |
| Cow position: | chr17:21874827-21874430 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 374 |
| Conread position: | 1-379 |
| Cow position: | chr17:20814860-20815263 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 277 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 204, 35 |
| Conread position: | 1-382 |
| Cow position: | chr17:21960197-21959793 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 254 |
| Conread position: | 1-383 |
| Cow position: | chr17:33289161-33288761 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 102 |
| Conread position: | 2-301 |
| Cow position: | chr17:20271859-20271546 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 236 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 150, 49 |
| Conread position: | 2-356 |
| Cow position: | chr17:6565970-6566337 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 253 |
| Conread position: | 2-377 |
| Cow position: | chr17:30984-31380 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 182 |
| Conread position: | 2-377 |
| Cow position: | chr17:20800307-20800702 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 374 |
| Conread position: | 2-377 |
| Cow position: | chr17:22057666-22057286 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 262 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 115, 56 |
| Conread position: | 2-381 |
| Cow position: | chr17:20780011-20780401 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 34 |
| Conread position: | 2-381 |
| Cow position: | chr17:29715696-29715299 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 38 |
| Conread position: | 2-383 |
| Cow position: | chr17:139157-139555 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 266 |
| Conread position: | 2-383 |
| Cow position: | chr17:12289927-12289522 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 52 |
| Conread position: | 2-383 |
| Cow position: | chr17:13144186-13143797 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 76 |
| Conread position: | 2-383 |
| Cow position: | chr17:28024349-28023949 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 115 |
| Conread position: | 3-275 |
| Cow position: | chr17:6848395-6848674 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 111, 231 |
| Conread position: | 4-377 |
| Cow position: | chr17:15854295-15854677 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 21 |
| Conread position: | 5-381 |
| Cow position: | chr17:27305659-27306049 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 177 |
| Conread position: | 5-381 |
| Cow position: | chr17:40405801-40406195 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 0 |
| Conread position: | 20-381 |
| Cow position: | chr17:1410730-1410352 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 47 |
| Conread position: | 42-383 |
| Cow position: | chr17:23337482-23337120 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 16 |
| Conread position: | 67-377 |
| Cow position: | chr17:13409777-13409468 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 232 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 48, 60 |
| Conread position: | 68-377 |
| Cow position: | chr17:21336139-21335811 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 45 |
| Conread position: | 71-381 |
| Cow position: | chr17:3154209-3153881 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 106 |
| Conread position: | 71-381 |
| Cow position: | chr17:21494944-21495265 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 230 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 53, 105 |
| Conread position: | 72-357 |
| Cow position: | chr17:20993481-20993172 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 227 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 77-381 |
| Cow position: | chr17:27667628-27667303 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 234 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 38, 107 |
| Conread position: | 85-381 |
| Cow position: | chr17:18266636-18266961 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 67, 187 |
| Conread position: | 91-383 |
| Cow position: | chr17:29276812-29277125 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 61, 93 |
| Conread position: | 92-379 |
| Cow position: | chr17:1025876-1026168 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 60, 130 |
| Conread position: | 97-381 |
| Cow position: | chr17:26764599-26764904 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 91 |
| Conread position: | 108-377 |
| Cow position: | chr17:23517569-23517281 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 69 |
| Conread position: | 115-371 |
| Cow position: | chr17:15300260-15299989 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 199 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 36, 69 |
| Conread position: | 149-382 |
| Cow position: | chr17:25344291-25344048 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 56, 24 |
| Conread position: | 150-377 |
| Cow position: | chr17:26514365-26514602 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 165 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 55, 23 |
| Conread position: | 150-380 |
| Cow position: | chr17:3371099-3371338 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 56, 16 |
| Conread position: | 150-381 |
| Cow position: | chr17:20033262-20033025 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 56, 25 |
| Conread position: | 153-377 |
| Cow position: | chr17:9853639-9853873 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 52, 20 |
| Conread position: | 167-377 |
| Cow position: | chr17:15893570-15893788 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 39, 153 |
| Conread position: | 271-381 |
| Cow position: | chr17:24587398-24587509 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 26, 0 |
Show alignments to all cow chromosomes.