Cow genome map
| Conread name: | Pla1-C0000936_N20 |
| Conread position: | 1-275 |
| Cow position: | chr21:29484478-29484755 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 151 |
| Conread position: | 1-377 |
| Cow position: | chr21:32297993-32297601 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 187 |
| Conread position: | 1-381 |
| Cow position: | chr21:31691009-31691392 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 141 |
| Conread position: | 1-383 |
| Cow position: | chr21:4732701-4732301 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 33 |
| Conread position: | 1-383 |
| Cow position: | chr21:29069803-29069413 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 9 |
| Conread position: | 2-256 |
| Cow position: | chr21:35573364-35573102 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 76, 23 |
| Conread position: | 2-282 |
| Cow position: | chr21:18601183-18601474 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 119, 20 |
| Conread position: | 2-282 |
| Cow position: | chr21:44073976-44074259 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 143, 23 |
| Conread position: | 2-355 |
| Cow position: | chr21:20262822-20262446 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 184 |
| Conread position: | 2-369 |
| Cow position: | chr21:34391452-34391069 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 182 |
| Conread position: | 2-374 |
| Cow position: | chr21:38900298-38900681 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 115 |
| Conread position: | 2-377 |
| Cow position: | chr21:4998969-4998577 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 18 |
| Conread position: | 2-377 |
| Cow position: | chr21:16695897-16696274 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 281 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 160, 64 |
| Conread position: | 2-377 |
| Cow position: | chr21:19766362-19766760 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 380 |
| Conread position: | 2-377 |
| Cow position: | chr21:27864006-27863610 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 2-383 |
| Cow position: | chr21:34658553-34658950 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 31 |
| Conread position: | 2-388 |
| Cow position: | chr21:36909331-36909748 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 252 |
| Conread position: | 3-381 |
| Cow position: | chr21:31435872-31436261 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 166 |
| Conread position: | 3-382 |
| Cow position: | chr21:21216626-21216226 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 181 |
| Conread position: | 8-382 |
| Cow position: | chr21:13163450-13163805 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 17 |
| Conread position: | 12-375 |
| Cow position: | chr21:13300672-13301061 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 47 |
| Conread position: | 13-381 |
| Cow position: | chr21:28259515-28259911 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 282 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 98, 178 |
| Conread position: | 25-277 |
| Cow position: | chr21:39583943-39583675 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 127, 91 |
| Conread position: | 31-378 |
| Cow position: | chr21:24223004-24222631 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 268 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 35, 101 |
| Conread position: | 44-381 |
| Cow position: | chr21:45263464-45263112 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 337 |
| Conread position: | 51-351 |
| Cow position: | chr21:2657158-2657472 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 59 |
| Conread position: | 52-379 |
| Cow position: | chr21:26681373-26681035 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 245 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 100, 7 |
| Conread position: | 53-357 |
| Cow position: | chr21:30849372-30849050 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 231 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 117, 89 |
| Conread position: | 65-375 |
| Cow position: | chr21:36225325-36225655 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 229 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 87, 54 |
| Conread position: | 66-377 |
| Cow position: | chr21:11195711-11196042 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 227 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 86, 309 |
| Conread position: | 72-375 |
| Cow position: | chr21:33933800-33933476 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 227 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 88, 274 |
| Conread position: | 83-378 |
| Cow position: | chr21:12338761-12339080 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 69, 167 |
| Conread position: | 85-381 |
| Cow position: | chr21:25158491-25158804 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 228 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 64, 16 |
| Conread position: | 86-383 |
| Cow position: | chr21:23900208-23899891 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 66, 17 |
| Conread position: | 97-383 |
| Cow position: | chr21:5153226-5153533 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 223 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 98-381 |
| Cow position: | chr21:40244044-40244349 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 222 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 54, 86 |
| Conread position: | 100-377 |
| Cow position: | chr21:30904989-30904695 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 52, 198 |
| Conread position: | 105-378 |
| Cow position: | chr21:4794838-4795136 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 223 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 45, 68 |
| Conread position: | 147-381 |
| Cow position: | chr21:13954182-13954427 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 59, 18 |
| Conread position: | 149-381 |
| Cow position: | chr21:35899483-35899722 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 58, 24 |
| Conread position: | 149-381 |
| Cow position: | chr21:37479631-37479870 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 183 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 54, 24 |
| Conread position: | 150-380 |
| Cow position: | chr21:24857984-24858224 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 23 |
| Conread position: | 150-383 |
| Cow position: | chr21:8985222-8985465 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 57, 23 |
| Conread position: | 150-383 |
| Cow position: | chr21:20045095-20044858 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 51, 130 |
| Conread position: | 153-339 |
| Cow position: | chr21:32574406-32574605 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 153-373 |
| Cow position: | chr21:4399476-4399705 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 54, 20 |
| Conread position: | 153-376 |
| Cow position: | chr21:40265510-40265742 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 54, 13 |
| Conread position: | 153-389 |
| Cow position: | chr21:37942006-37941761 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 53, 13 |
| Conread position: | 154-357 |
| Cow position: | chr21:34010711-34010501 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 52, 91 |
| Conread position: | 167-377 |
| Cow position: | chr21:19614866-19615079 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 39, 161 |
| Conread position: | 168-377 |
| Cow position: | chr21:31702266-31702047 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 38, 197 |
| Conread position: | 169-383 |
| Cow position: | chr21:46777282-46777059 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 35, 187 |
Show alignments to all cow chromosomes.