Cow genome map
| Conread name: | Pla1-C0000936_N20 |
| Conread position: | 1-341 |
| Cow position: | chr3:58971329-58971674 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 151, 101 |
| Conread position: | 1-351 |
| Cow position: | chr3:8557352-8556984 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 46 |
| Conread position: | 1-375 |
| Cow position: | chr3:35884527-35884134 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 176 |
| Conread position: | 1-377 |
| Cow position: | chr3:11333884-11333495 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 274 |
| Conread position: | 1-380 |
| Cow position: | chr3:50768100-50768504 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 183 |
| Conread position: | 1-381 |
| Cow position: | chr3:3884601-3884200 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 184 |
| Conread position: | 2-268 |
| Cow position: | chr3:77004917-77005192 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 199 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 120, 125 |
| Conread position: | 2-275 |
| Cow position: | chr3:64683225-64682946 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 124, 32 |
| Conread position: | 2-277 |
| Cow position: | chr3:69779730-69779439 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 214 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 139, 101 |
| Conread position: | 2-317 |
| Cow position: | chr3:68155907-68156240 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 36 |
| Conread position: | 2-339 |
| Cow position: | chr3:49132825-49132470 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 258 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 150, 23 |
| Conread position: | 2-356 |
| Cow position: | chr3:15052500-15052143 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 212 |
| Conread position: | 2-357 |
| Cow position: | chr3:66610413-66610035 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 2-361 |
| Cow position: | chr3:16752792-16752446 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 265 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 204, 108 |
| Conread position: | 2-371 |
| Cow position: | chr3:56976559-56976175 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 101 |
| Conread position: | 2-376 |
| Cow position: | chr3:61678129-61678513 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 56 |
| Conread position: | 2-377 |
| Cow position: | chr3:6264933-6265330 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 182 |
| Conread position: | 2-377 |
| Cow position: | chr3:31224881-31225272 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 236 |
| Conread position: | 2-377 |
| Cow position: | chr3:48567234-48566844 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 49 |
| Conread position: | 2-377 |
| Cow position: | chr3:77187877-77188261 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 181 |
| Conread position: | 2-380 |
| Cow position: | chr3:16157112-16157506 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 182 |
| Conread position: | 2-381 |
| Cow position: | chr3:18887005-18887408 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 2-381 |
| Cow position: | chr3:46900623-46901019 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 174 |
| Conread position: | 2-383 |
| Cow position: | chr3:65236444-65236848 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 62 |
| Conread position: | 2-390 |
| Cow position: | chr3:76000365-75999954 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 17 |
| Conread position: | 8-372 |
| Cow position: | chr3:22089847-22089465 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 105 |
| Conread position: | 11-381 |
| Cow position: | chr3:6689432-6689821 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 102 |
| Conread position: | 11-381 |
| Cow position: | chr3:61278351-61278733 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 273 |
| Conread position: | 11-384 |
| Cow position: | chr3:24853138-24852757 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 35 |
| Conread position: | 25-377 |
| Cow position: | chr3:62321691-62321315 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 265 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 112, 78 |
| Conread position: | 25-383 |
| Cow position: | chr3:3165043-3164667 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 160 |
| Conread position: | 41-381 |
| Cow position: | chr3:62611379-62611738 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 62, 45 |
| Conread position: | 62-377 |
| Cow position: | chr3:72776724-72777064 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 241 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 64-373 |
| Cow position: | chr3:17331257-17331587 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 119 |
| Conread position: | 69-381 |
| Cow position: | chr3:67161442-67161763 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 57, 85 |
| Conread position: | 85-375 |
| Cow position: | chr3:15161555-15161258 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 73, 91 |
| Conread position: | 103-357 |
| Cow position: | chr3:50069316-50069582 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 49, 73 |
| Conread position: | 103-375 |
| Cow position: | chr3:42177685-42177979 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 49, 39 |
| Conread position: | 119-373 |
| Cow position: | chr3:9676794-9676528 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 33, 55 |
| Conread position: | 146-356 |
| Cow position: | chr3:9116493-9116708 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 61, 6 |
| Conread position: | 149-357 |
| Cow position: | chr3:12671110-12670887 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 55, 24 |
| Conread position: | 149-369 |
| Cow position: | chr3:8148078-8147850 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 58, 160 |
| Conread position: | 149-381 |
| Cow position: | chr3:21341378-21341139 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 185 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 56, 24 |
| Conread position: | 150-361 |
| Cow position: | chr3:49792999-49793216 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 57, 23 |
| Conread position: | 153-340 |
| Cow position: | chr3:77565069-77565266 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 53, 20 |
| Conread position: | 153-381 |
| Cow position: | chr3:14717403-14717633 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 54, 20 |
| Conread position: | 166-339 |
| Cow position: | chr3:68586642-68586823 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 166-383 |
| Cow position: | chr3:55010551-55010327 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 40, 171 |
| Conread position: | 166-383 |
| Cow position: | chr3:68302929-68303157 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 167-376 |
| Cow position: | chr3:29891808-29891596 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 88, 173 |
| Conread position: | 168-383 |
| Cow position: | chr3:39328015-39328229 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 39, 144 |
| Conread position: | 202-381 |
| Cow position: | chr3:65019973-65020161 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 9, 0 |
Show alignments to all cow chromosomes.