Cow genome map
| Conread name: | Pla1-C0000936_N20 |
| Conread position: | 1-265 |
| Cow position: | chr4:4127079-4127354 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 151, 103 |
| Conread position: | 1-281 |
| Cow position: | chr4:33613197-33612908 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 151 |
| Conread position: | 1-380 |
| Cow position: | chr4:16602611-16602215 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 79 |
| Conread position: | 1-381 |
| Cow position: | chr4:34223334-34223731 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 319 |
| Conread position: | 1-381 |
| Cow position: | chr4:63459745-63459373 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 126 |
| Conread position: | 1-382 |
| Cow position: | chr4:66173347-66172958 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 102 |
| Conread position: | 1-383 |
| Cow position: | chr4:34172127-34171725 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 365 |
| Conread position: | 2-361 |
| Cow position: | chr4:6653190-6653555 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 182 |
| Conread position: | 2-361 |
| Cow position: | chr4:14353240-14352858 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 338 |
| Conread position: | 2-371 |
| Cow position: | chr4:22237030-22236640 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 60 |
| Conread position: | 2-375 |
| Cow position: | chr4:9519740-9520132 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 113 |
| Conread position: | 2-375 |
| Cow position: | chr4:30690190-30690561 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 57 |
| Conread position: | 2-377 |
| Cow position: | chr4:2263310-2262915 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 101 |
| Conread position: | 2-377 |
| Cow position: | chr4:11872466-11872073 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 23 |
| Conread position: | 2-377 |
| Cow position: | chr4:29035362-29035753 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 64 |
| Conread position: | 2-381 |
| Cow position: | chr4:23655438-23655838 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 181 |
| Conread position: | 2-381 |
| Cow position: | chr4:44450141-44449744 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 42 |
| Conread position: | 2-381 |
| Cow position: | chr4:48152927-48152525 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 96 |
| Conread position: | 2-381 |
| Cow position: | chr4:49408923-49409308 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 65 |
| Conread position: | 2-381 |
| Cow position: | chr4:55271313-55270918 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 129 |
| Conread position: | 2-382 |
| Cow position: | chr4:28613260-28613665 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 186 |
| Conread position: | 2-383 |
| Cow position: | chr4:12018005-12018402 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 42 |
| Conread position: | 2-383 |
| Cow position: | chr4:50193937-50194335 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 122 |
| Conread position: | 3-377 |
| Cow position: | chr4:14230182-14229782 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 0 |
| Conread position: | 3-377 |
| Cow position: | chr4:39009410-39009804 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 22 |
| Conread position: | 4-287 |
| Cow position: | chr4:213327-213614 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 214 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 101, 58 |
| Conread position: | 8-383 |
| Cow position: | chr4:27755862-27755456 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 285 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 132, 181 |
| Conread position: | 11-381 |
| Cow position: | chr4:65826416-65826012 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 176 |
| Conread position: | 12-369 |
| Cow position: | chr4:385181-385548 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 194, 248 |
| Conread position: | 25-379 |
| Cow position: | chr4:1356041-1355675 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 34 |
| Conread position: | 25-383 |
| Cow position: | chr4:46668050-46668415 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 63 |
| Conread position: | 34-377 |
| Cow position: | chr4:38067365-38067722 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 69 |
| Conread position: | 50-381 |
| Cow position: | chr4:61898042-61897697 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 255 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 36, 135 |
| Conread position: | 56-377 |
| Cow position: | chr4:47047238-47047583 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 128 |
| Conread position: | 61-375 |
| Cow position: | chr4:19584199-19584541 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 240 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 54, 130 |
| Conread position: | 62-381 |
| Cow position: | chr4:19096800-19097130 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 315 |
| Conread position: | 68-377 |
| Cow position: | chr4:43147911-43148242 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 238 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 84, 232 |
| Conread position: | 69-381 |
| Cow position: | chr4:560915-561244 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 9 |
| Conread position: | 80-362 |
| Cow position: | chr4:7501407-7501704 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 72, 104 |
| Conread position: | 86-375 |
| Cow position: | chr4:56852426-56852734 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 99 |
| Conread position: | 87-383 |
| Cow position: | chr4:9445161-9444846 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 229 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 28, 16 |
| Conread position: | 89-381 |
| Cow position: | chr4:27997213-27997526 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 63, 280 |
| Conread position: | 103-377 |
| Cow position: | chr4:351772-352067 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 49, 81 |
| Conread position: | 103-381 |
| Cow position: | chr4:22138688-22138393 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 12 |
| Conread position: | 103-381 |
| Cow position: | chr4:56409726-56410024 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 74 |
| Conread position: | 149-383 |
| Cow position: | chr4:24458498-24458254 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 58, 24 |
| Conread position: | 150-326 |
| Cow position: | chr4:1491257-1491074 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 56, 23 |
| Conread position: | 150-371 |
| Cow position: | chr4:53134224-53134445 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 10, 24 |
| Conread position: | 150-381 |
| Cow position: | chr4:10731821-10732061 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 150-381 |
| Cow position: | chr4:62772335-62772091 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 54, 23 |
| Conread position: | 152-373 |
| Cow position: | chr4:21257522-21257296 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 54, 21 |
| Conread position: | 152-383 |
| Cow position: | chr4:46274797-46275038 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 53, 22 |
| Conread position: | 153-361 |
| Cow position: | chr4:40576301-40576094 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 54, 13 |
| Conread position: | 153-384 |
| Cow position: | chr4:19306861-19307101 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 53, 13 |
| Conread position: | 166-377 |
| Cow position: | chr4:22073051-22072834 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 39, 78 |
| Conread position: | 166-383 |
| Cow position: | chr4:43866229-43866008 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 165 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 39, 91 |
| Conread position: | 167-375 |
| Cow position: | chr4:38467233-38467451 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 167-377 |
| Cow position: | chr4:21058772-21058547 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 167-381 |
| Cow position: | chr4:36840898-36841122 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 174 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 168-383 |
| Cow position: | chr4:19237862-19238084 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 176-377 |
| Cow position: | chr4:52979736-52979532 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 79, 0 |
Show alignments to all cow chromosomes.