Cow genome map
| Conread name: | Pla1-C0000936_N20 |
| Conread position: | 1-377 |
| Cow position: | chr5:6044761-6045159 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 1-377 |
| Cow position: | chr5:35826076-35826462 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 65 |
| Conread position: | 1-381 |
| Cow position: | chr5:15363369-15363766 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 119 |
| Conread position: | 1-381 |
| Cow position: | chr5:15598762-15598358 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 187 |
| Conread position: | 1-381 |
| Cow position: | chr5:19470702-19470311 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 177 |
| Conread position: | 1-381 |
| Cow position: | chr5:30302373-30302771 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 183 |
| Conread position: | 2-298 |
| Cow position: | chr5:56820739-56821045 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 9 |
| Conread position: | 2-337 |
| Cow position: | chr5:27179135-27179486 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 182 |
| Conread position: | 2-362 |
| Cow position: | chr5:34192422-34192802 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 297 |
| Conread position: | 2-369 |
| Cow position: | chr5:24348600-24348975 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 99 |
| Conread position: | 2-370 |
| Cow position: | chr5:12315797-12316179 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 97 |
| Conread position: | 2-375 |
| Cow position: | chr5:54868894-54869285 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 73 |
| Conread position: | 2-377 |
| Cow position: | chr5:31097326-31096932 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 179 |
| Conread position: | 2-381 |
| Cow position: | chr5:21943852-21944258 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 2-381 |
| Cow position: | chr5:47889224-47888839 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 77 |
| Conread position: | 2-381 |
| Cow position: | chr5:54405419-54405020 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 289 |
| Conread position: | 2-381 |
| Cow position: | chr5:59877262-59876863 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 350 |
| Conread position: | 2-383 |
| Cow position: | chr5:3204330-3204711 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 276 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 150, 65 |
| Conread position: | 2-383 |
| Cow position: | chr5:5937800-5938202 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 150 |
| Conread position: | 2-383 |
| Cow position: | chr5:7192921-7193309 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 60 |
| Conread position: | 2-383 |
| Cow position: | chr5:41523309-41522918 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 87 |
| Conread position: | 2-383 |
| Cow position: | chr5:49522202-49522606 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 184 |
| Conread position: | 2-383 |
| Cow position: | chr5:54714266-54713859 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 3-383 |
| Cow position: | chr5:54337401-54337801 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 47 |
| Conread position: | 3-383 |
| Cow position: | chr5:70593501-70593101 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 114 |
| Conread position: | 5-383 |
| Cow position: | chr5:29770996-29771392 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 112 |
| Conread position: | 5-383 |
| Cow position: | chr5:39448055-39447653 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 179 |
| Conread position: | 11-384 |
| Cow position: | chr5:27154511-27154898 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 9 |
| Conread position: | 14-381 |
| Cow position: | chr5:26378178-26377795 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 11 |
| Conread position: | 16-377 |
| Cow position: | chr5:47871556-47871179 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 275 |
| Conread position: | 16-381 |
| Cow position: | chr5:66816090-66815701 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 117 |
| Conread position: | 19-383 |
| Cow position: | chr5:41469315-41469687 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 248 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 187, 39 |
| Conread position: | 25-351 |
| Cow position: | chr5:66971898-66972248 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 249 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 97, 162 |
| Conread position: | 36-383 |
| Cow position: | chr5:41546381-41546015 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 149 |
| Conread position: | 44-375 |
| Cow position: | chr5:65593391-65593749 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 252 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 108, 137 |
| Conread position: | 67-381 |
| Cow position: | chr5:47601349-47601691 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 113 |
| Conread position: | 73-257 |
| Cow position: | chr5:16062263-16062067 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 67, 94 |
| Conread position: | 76-341 |
| Cow position: | chr5:32809453-32809165 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 76, 108 |
| Conread position: | 103-381 |
| Cow position: | chr5:12672448-12672156 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 48, 189 |
| Conread position: | 149-349 |
| Cow position: | chr5:22565272-22565487 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 56, 24 |
| Conread position: | 150-371 |
| Cow position: | chr5:4388988-4389218 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 56, 23 |
| Conread position: | 150-373 |
| Cow position: | chr5:22737740-22737972 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 57, 23 |
| Conread position: | 150-383 |
| Cow position: | chr5:47317333-47317090 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 55, 23 |
| Conread position: | 151-377 |
| Cow position: | chr5:17027734-17027966 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 56, 23 |
| Conread position: | 151-381 |
| Cow position: | chr5:61030594-61030353 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 153-333 |
| Cow position: | chr5:7921744-7921551 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 53, 20 |
| Conread position: | 153-382 |
| Cow position: | chr5:66338724-66338959 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 54, 20 |
| Conread position: | 162-377 |
| Cow position: | chr5:46653552-46653773 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 44, 11 |
| Conread position: | 162-383 |
| Cow position: | chr5:55428203-55428433 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 44, 11 |
| Conread position: | 167-375 |
| Cow position: | chr5:13691924-13691705 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 38, 69 |
| Conread position: | 167-377 |
| Cow position: | chr5:23397538-23397751 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 88, 111 |
| Conread position: | 168-377 |
| Cow position: | chr5:12718906-12719125 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 44, 161 |
| Conread position: | 168-377 |
| Cow position: | chr5:41531438-41531216 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 39, 0 |
Show alignments to all cow chromosomes.