Cow genome map
| Conread name: | Pla1-C0000936_N20 |
| Conread position: | 1-372 |
| Cow position: | chr6:56842661-56843040 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 81 |
| Conread position: | 1-375 |
| Cow position: | chr6:8210092-8209705 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 179 |
| Conread position: | 1-375 |
| Cow position: | chr6:49411187-49410804 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 107 |
| Conread position: | 1-381 |
| Cow position: | chr6:2607103-2607502 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 397 |
| Conread position: | 1-383 |
| Cow position: | chr6:37644056-37644462 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 273 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 148, 276 |
| Conread position: | 2-268 |
| Cow position: | chr6:65930860-65931147 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 2-275 |
| Cow position: | chr6:47171685-47171974 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 30, 180 |
| Conread position: | 2-282 |
| Cow position: | chr6:34030893-34031173 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 92, 63 |
| Conread position: | 2-373 |
| Cow position: | chr6:22507243-22507628 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 266 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 119, 40 |
| Conread position: | 2-375 |
| Cow position: | chr6:31548938-31548545 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 31 |
| Conread position: | 2-377 |
| Cow position: | chr6:12622961-12623354 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 182 |
| Conread position: | 2-377 |
| Cow position: | chr6:46391185-46391574 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 378 |
| Conread position: | 2-377 |
| Cow position: | chr6:53345287-53345682 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 111 |
| Conread position: | 2-377 |
| Cow position: | chr6:54648035-54647640 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 182 |
| Conread position: | 2-377 |
| Cow position: | chr6:61632106-61631727 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 80 |
| Conread position: | 2-377 |
| Cow position: | chr6:68829933-68830329 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 311 |
| Conread position: | 2-381 |
| Cow position: | chr6:14696881-14696482 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 23 |
| Conread position: | 2-382 |
| Cow position: | chr6:17414957-17414561 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 60 |
| Conread position: | 2-383 |
| Cow position: | chr6:181902-181501 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 184 |
| Conread position: | 2-383 |
| Cow position: | chr6:16765901-16765503 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 72 |
| Conread position: | 2-383 |
| Cow position: | chr6:43789728-43789333 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 86 |
| Conread position: | 3-383 |
| Cow position: | chr6:33509077-33509473 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 36 |
| Conread position: | 8-357 |
| Cow position: | chr6:34075522-34075885 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 293 |
| Conread position: | 14-381 |
| Cow position: | chr6:14839523-14839140 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 315 |
| Conread position: | 14-383 |
| Cow position: | chr6:57473897-57474271 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 140 |
| Conread position: | 19-381 |
| Cow position: | chr6:58073544-58073934 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 366 |
| Conread position: | 52-381 |
| Cow position: | chr6:51071262-51071598 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 233 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 72, 86 |
| Conread position: | 54-381 |
| Cow position: | chr6:10605226-10605575 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 246 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 60-383 |
| Cow position: | chr6:58747758-58748102 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 5, 125 |
| Conread position: | 66-377 |
| Cow position: | chr6:66566011-66566341 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 86, 56 |
| Conread position: | 72-350 |
| Cow position: | chr6:20245644-20245943 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 80, 112 |
| Conread position: | 86-361 |
| Cow position: | chr6:46205594-46205888 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 209 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 66, 15 |
| Conread position: | 104-383 |
| Cow position: | chr6:58031714-58032012 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 18, 81 |
| Conread position: | 113-361 |
| Cow position: | chr6:24652579-24652312 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 36, 71 |
| Conread position: | 116-371 |
| Cow position: | chr6:33302015-33302292 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 198 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 36, 135 |
| Conread position: | 141-375 |
| Cow position: | chr6:55610597-55610355 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 26, 145 |
| Conread position: | 142-375 |
| Cow position: | chr6:1944372-1944610 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 64, 9 |
| Conread position: | 150-353 |
| Cow position: | chr6:22921036-22921249 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 55, 23 |
| Conread position: | 150-377 |
| Cow position: | chr6:6060908-6060671 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 56, 23 |
| Conread position: | 150-382 |
| Cow position: | chr6:14958693-14958458 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 61, 23 |
| Conread position: | 150-382 |
| Cow position: | chr6:68252433-68252675 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 55, 12 |
| Conread position: | 151-381 |
| Cow position: | chr6:19427099-19427339 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 153-380 |
| Cow position: | chr6:32854607-32854381 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 53, 20 |
| Conread position: | 153-382 |
| Cow position: | chr6:24327483-24327246 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 176 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 54, 20 |
| Conread position: | 167-381 |
| Cow position: | chr6:54867184-54867402 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 39, 44 |
| Conread position: | 168-375 |
| Cow position: | chr6:48468468-48468687 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 38, 204 |
| Conread position: | 168-377 |
| Cow position: | chr6:12927789-12928006 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 39, 91 |
Show alignments to all cow chromosomes.