Cow genome map

Conread name: Pla1-C0000936_N20

Conread position: 1-205
Cow position: chr7:48714032-48714229 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 152
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 127, 0

Conread position: 1-340
Cow position: chr7:11783930-11783568 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 22

Conread position: 1-340
Cow position: chr7:53772815-53772464 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 53

Conread position: 1-368
Cow position: chr7:33697455-33697853 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 280

Conread position: 1-373
Cow position: chr7:23276781-23276388 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 36

Conread position: 1-377
Cow position: chr7:17590959-17591361 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 274
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 7, 340

Conread position: 1-381
Cow position: chr7:4452093-4452492 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 0

Conread position: 1-381
Cow position: chr7:24990775-24991168 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 43

Conread position: 1-381
Cow position: chr7:35111064-35111464 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 185

Conread position: 1-383
Cow position: chr7:27762471-27762857 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 272
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 17, 9

Conread position: 2-357
Cow position: chr7:59688025-59688409 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 271
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 123, 186

Conread position: 2-367
Cow position: chr7:4130299-4129912 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 264
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 46, 65

Conread position: 2-371
Cow position: chr7:21326550-21326920 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 129

Conread position: 2-371
Cow position: chr7:44597205-44596813 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 286
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 150, 35

Conread position: 2-376
Cow position: chr7:62193063-62193450 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 15

Conread position: 2-377
Cow position: chr7:22357996-22357601 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 293

Conread position: 2-377
Cow position: chr7:38081660-38082040 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 35

Conread position: 2-379
Cow position: chr7:18872708-18873099 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 101

Conread position: 2-379
Cow position: chr7:35778945-35779338 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 73

Conread position: 2-381
Cow position: chr7:24764387-24763989 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 115

Conread position: 2-381
Cow position: chr7:26011905-26012316 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 256

Conread position: 2-383
Cow position: chr7:13928644-13928260 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 101

Conread position: 2-383
Cow position: chr7:23646094-23646497 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 188

Conread position: 2-383
Cow position: chr7:25723184-25722774 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 289
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 100, 169

Conread position: 2-383
Cow position: chr7:35652584-35652186 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 181

Conread position: 2-383
Cow position: chr7:41771434-41771041 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 64

Conread position: 2-383
Cow position: chr7:50076231-50075832 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 54

Conread position: 2-383
Cow position: chr7:67803464-67803859 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 334

Conread position: 2-388
Cow position: chr7:49608129-49608535 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 183

Conread position: 4-381
Cow position: chr7:25414892-25415287 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 181

Conread position: 4-383
Cow position: chr7:36737642-36738025 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 29

Conread position: 8-373
Cow position: chr7:23465237-23464869 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 103

Conread position: 18-361
Cow position: chr7:19982311-19981969 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 18

Conread position: 20-383
Cow position: chr7:44544557-44544174 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 274
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 131, 19

Conread position: 25-381
Cow position: chr7:20534391-20534765 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 299

Conread position: 30-383
Cow position: chr7:9146158-9146537 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 162

Conread position: 31-312
Cow position: chr7:55085511-55085212 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 153

Conread position: 31-377
Cow position: chr7:17816282-17816642 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 152

Conread position: 32-355
Cow position: chr7:10760337-10759993 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 152

Conread position: 32-383
Cow position: chr7:26632290-26631917 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 154

Conread position: 40-383
Cow position: chr7:25512591-25512226 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 147

Conread position: 41-383
Cow position: chr7:10122252-10122604 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 252
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 111, 48

Conread position: 53-381
Cow position: chr7:6057672-6058023 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 0

Conread position: 58-383
Cow position: chr7:61818387-61818048 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 249
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 93, 263

Conread position: 72-390
Cow position: chr7:18388834-18388495 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 0

Conread position: 75-383
Cow position: chr7:49942847-49942532 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 222
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 77, 182

Conread position: 76-381
Cow position: chr7:39042165-39042493 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 234
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 60, 225

Conread position: 92-383
Cow position: chr7:54712003-54712309 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 221
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 20, 216

Conread position: 94-377
Cow position: chr7:24237243-24237536 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 208
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 58, 23

Conread position: 101-381
Cow position: chr7:32711389-32711088 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 208
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 8, 0

Conread position: 101-383
Cow position: chr7:9193651-9193350 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 222
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 14, 278

Conread position: 103-377
Cow position: chr7:54089796-54090091 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 209
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 58, 225

Conread position: 108-383
Cow position: chr7:36664928-36665226 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 212
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 44, 21

Conread position: 112-382
Cow position: chr7:44039097-44039383 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 212
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 40, 265

Conread position: 117-380
Cow position: chr7:24797082-24796801 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 195
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 15, 138

Conread position: 138-308
Cow position: chr7:28336817-28336997 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 132
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 67, 35

Conread position: 149-381
Cow position: chr7:27079290-27079521 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 172
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 57, 24

Conread position: 150-357
Cow position: chr7:34979020-34979253 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 173
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 56, 23

Conread position: 150-381
Cow position: chr7:60869384-60869622 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 167
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 56, 23

Conread position: 153-343
Cow position: chr7:57021767-57021568 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 142
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 53, 13

Conread position: 153-377
Cow position: chr7:58170394-58170629 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 165
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 13, 0

Conread position: 153-384
Cow position: chr7:61128873-61129113 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 174
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 53, 20

Conread position: 162-334
Cow position: chr7:20332776-20332956 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 131
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 43, 11

Conread position: 166-378
Cow position: chr7:27509384-27509606 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 166
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 40, 0

Conread position: 167-381
Cow position: chr7:51407778-51407994 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 151
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 39, 140

Conread position: 167-383
Cow position: chr7:9661368-9661152 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 165
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 39, 91

Conread position: 167-383
Cow position: chr7:30769041-30768822 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 159
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 40, 145

Conread position: 168-343
Cow position: chr7:60756853-60756671 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 135
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 39, 112

Conread position: 168-352
Cow position: chr7:8735547-8735725 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 141
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 40, 138

Conread position: 168-377
Cow position: chr7:28324319-28324523 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 151
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 57, 46

Conread position: 168-377
Cow position: chr7:52664269-52664057 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 152
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 37, 105

Conread position: 168-383
Cow position: chr7:41299754-41299538 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 161
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 38, 192

Conread position: 169-376
Cow position: chr7:31204853-31204642 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 155
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 37, 191

Conread position: 218-383
Cow position: chr7:57244362-57244195 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 125
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 50, 0

Show alignments to all cow chromosomes.