Cow genome map
| Conread name: | Pla1-C0000936_N20 |
| Conread position: | 1-251 |
| Cow position: | chr9:9405448-9405703 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 150, 161 |
| Conread position: | 1-282 |
| Cow position: | chr9:51621288-51620980 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 20, 43 |
| Conread position: | 1-373 |
| Cow position: | chr9:31115250-31115637 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 326 |
| Conread position: | 1-377 |
| Cow position: | chr9:1520149-1520547 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 183 |
| Conread position: | 1-377 |
| Cow position: | chr9:8154755-8154362 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 127 |
| Conread position: | 1-377 |
| Cow position: | chr9:20942045-20942423 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 276 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 151, 81 |
| Conread position: | 1-382 |
| Cow position: | chr9:1855855-1855458 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 72 |
| Conread position: | 1-382 |
| Cow position: | chr9:28726150-28726545 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 35 |
| Conread position: | 2-271 |
| Cow position: | chr9:25959034-25958747 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 160, 142 |
| Conread position: | 2-298 |
| Cow position: | chr9:34901042-34901342 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 149, 71 |
| Conread position: | 2-306 |
| Cow position: | chr9:13472023-13471703 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 177 |
| Conread position: | 2-346 |
| Cow position: | chr9:24873406-24873063 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 74 |
| Conread position: | 2-362 |
| Cow position: | chr9:13186148-13186528 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 254 |
| Conread position: | 2-369 |
| Cow position: | chr9:21459583-21459967 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 182 |
| Conread position: | 2-377 |
| Cow position: | chr9:18381435-18381042 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 270 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 112, 60 |
| Conread position: | 2-379 |
| Cow position: | chr9:34696717-34697114 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 2-381 |
| Cow position: | chr9:20407208-20406817 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 49 |
| Conread position: | 2-383 |
| Cow position: | chr9:9491364-9490972 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 31 |
| Conread position: | 2-383 |
| Cow position: | chr9:18139727-18140117 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 150 |
| Conread position: | 2-383 |
| Cow position: | chr9:22656367-22656769 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 182 |
| Conread position: | 2-383 |
| Cow position: | chr9:29184559-29184956 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 122 |
| Conread position: | 2-383 |
| Cow position: | chr9:37017463-37017061 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 183 |
| Conread position: | 2-383 |
| Cow position: | chr9:40326971-40327372 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 287 |
| Conread position: | 2-383 |
| Cow position: | chr9:59171815-59172199 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 267 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 83, 129 |
| Conread position: | 3-377 |
| Cow position: | chr9:22617195-22616806 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 20 |
| Conread position: | 3-383 |
| Cow position: | chr9:30401840-30402241 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 272 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 71, 27 |
| Conread position: | 8-258 |
| Cow position: | chr9:7159266-7159528 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 198 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 70, 28 |
| Conread position: | 8-360 |
| Cow position: | chr9:10634457-10634818 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 157 |
| Conread position: | 8-381 |
| Cow position: | chr9:53607821-53608212 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 176 |
| Conread position: | 11-383 |
| Cow position: | chr9:6952659-6952267 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 216 |
| Conread position: | 21-381 |
| Cow position: | chr9:54413043-54412662 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 264 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 131, 163 |
| Conread position: | 25-381 |
| Cow position: | chr9:45284987-45285348 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 161 |
| Conread position: | 29-361 |
| Cow position: | chr9:55074586-55074936 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 27 |
| Conread position: | 32-381 |
| Cow position: | chr9:47499651-47500024 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 71 |
| Conread position: | 34-357 |
| Cow position: | chr9:53110067-53109729 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 249 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 8, 38 |
| Conread position: | 34-381 |
| Cow position: | chr9:28746979-28747342 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 79 |
| Conread position: | 42-379 |
| Cow position: | chr9:49544520-49544879 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 310 |
| Conread position: | 54-377 |
| Cow position: | chr9:8998083-8997739 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 244 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 62-372 |
| Cow position: | chr9:3411287-3410957 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 239 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 90, 122 |
| Conread position: | 71-373 |
| Cow position: | chr9:36490418-36490708 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 227, 102 |
| Conread position: | 72-334 |
| Cow position: | chr9:35357420-35357692 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 80, 243 |
| Conread position: | 105-377 |
| Cow position: | chr9:8937625-8937331 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 205 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 107-381 |
| Cow position: | chr9:54528987-54528694 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 58, 6 |
| Conread position: | 111-281 |
| Cow position: | chr9:9640661-9640842 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 146-381 |
| Cow position: | chr9:34355509-34355746 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 61, 27 |
| Conread position: | 149-377 |
| Cow position: | chr9:23430728-23430959 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 57, 24 |
| Conread position: | 150-371 |
| Cow position: | chr9:11299281-11299508 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 55, 23 |
| Conread position: | 150-377 |
| Cow position: | chr9:10966360-10966126 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 52, 12 |
| Conread position: | 150-381 |
| Cow position: | chr9:20848357-20848114 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 186 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 57, 23 |
| Conread position: | 150-381 |
| Cow position: | chr9:58647463-58647220 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 57, 23 |
| Conread position: | 150-383 |
| Cow position: | chr9:58451687-58451920 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 175 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 55, 23 |
| Conread position: | 153-381 |
| Cow position: | chr9:62400372-62400133 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 167-377 |
| Cow position: | chr9:33823495-33823281 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 39, 155 |
| Conread position: | 167-377 |
| Cow position: | chr9:64055457-64055676 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 39, 202 |
| Conread position: | 167-383 |
| Cow position: | chr9:8637060-8636829 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 39, 66 |
| Conread position: | 167-383 |
| Cow position: | chr9:34737814-34738039 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 40, 189 |
| Conread position: | 169-361 |
| Cow position: | chr9:28740077-28739869 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 170-375 |
| Cow position: | chr9:5345641-5345432 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 65, 44 |
| Conread position: | 170-379 |
| Cow position: | chr9:7363436-7363208 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 214-381 |
| Cow position: | chr9:54177895-54178070 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 46, 0 |
Show alignments to all cow chromosomes.