Cow genome map
| Conread name: | Pla1-C0000936_N20 |
| Conread position: | 1-282 |
| Cow position: | chrX:4750896-4750602 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 112 |
| Conread position: | 1-310 |
| Cow position: | chrX:38852635-38852962 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 182 |
| Conread position: | 1-313 |
| Cow position: | chrX:10256666-10256335 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 183 |
| Conread position: | 1-361 |
| Cow position: | chrX:45967648-45968020 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 263 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 151, 67 |
| Conread position: | 1-371 |
| Cow position: | chrX:20801249-20801645 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 267 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 111, 63 |
| Conread position: | 1-375 |
| Cow position: | chrX:16078144-16078537 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 265 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 36, 122 |
| Conread position: | 1-377 |
| Cow position: | chrX:13177989-13177592 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 59 |
| Conread position: | 1-381 |
| Cow position: | chrX:6543733-6544129 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 119 |
| Conread position: | 1-383 |
| Cow position: | chrX:45413173-45412776 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 119 |
| Conread position: | 2-274 |
| Cow position: | chrX:29602563-29602280 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 101 |
| Conread position: | 2-303 |
| Cow position: | chrX:23341516-23341199 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 178 |
| Conread position: | 2-363 |
| Cow position: | chrX:31728940-31729315 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 39 |
| Conread position: | 2-369 |
| Cow position: | chrX:37489203-37489595 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 174 |
| Conread position: | 2-371 |
| Cow position: | chrX:31373076-31373441 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 125 |
| Conread position: | 2-375 |
| Cow position: | chrX:9128533-9128927 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 182 |
| Conread position: | 2-375 |
| Cow position: | chrX:20582508-20582901 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 78 |
| Conread position: | 2-376 |
| Cow position: | chrX:27446172-27446560 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 108 |
| Conread position: | 2-377 |
| Cow position: | chrX:22812539-22812933 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 318 |
| Conread position: | 2-377 |
| Cow position: | chrX:23135053-23135441 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 334 |
| Conread position: | 2-377 |
| Cow position: | chrX:24424924-24424515 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 286 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 32, 258 |
| Conread position: | 2-377 |
| Cow position: | chrX:27498244-27498641 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 2-377 |
| Cow position: | chrX:38072290-38071898 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 182 |
| Conread position: | 2-381 |
| Cow position: | chrX:9651569-9651169 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 292 |
| Conread position: | 2-381 |
| Cow position: | chrX:12309909-12309512 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 180 |
| Conread position: | 2-381 |
| Cow position: | chrX:22115807-22115405 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 64 |
| Conread position: | 2-381 |
| Cow position: | chrX:31261159-31260753 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 111 |
| Conread position: | 2-381 |
| Cow position: | chrX:40452743-40452336 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 38 |
| Conread position: | 2-381 |
| Cow position: | chrX:41192166-41192559 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 302 |
| Conread position: | 2-382 |
| Cow position: | chrX:6493209-6493608 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 182 |
| Conread position: | 2-383 |
| Cow position: | chrX:11083133-11082735 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 95 |
| Conread position: | 2-383 |
| Cow position: | chrX:22811363-22811764 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 182 |
| Conread position: | 2-383 |
| Cow position: | chrX:23316943-23316544 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 0 |
| Conread position: | 2-383 |
| Cow position: | chrX:31202318-31202719 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 273 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 167, 23 |
| Conread position: | 2-383 |
| Cow position: | chrX:36250387-36249983 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 184 |
| Conread position: | 2-383 |
| Cow position: | chrX:38963590-38963985 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 314 |
| Conread position: | 2-383 |
| Cow position: | chrX:41156788-41157190 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 344 |
| Conread position: | 2-384 |
| Cow position: | chrX:22600936-22600537 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 75 |
| Conread position: | 3-373 |
| Cow position: | chrX:13912574-13912949 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 14 |
| Conread position: | 5-361 |
| Cow position: | chrX:42470456-42470080 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 53 |
| Conread position: | 8-377 |
| Cow position: | chrX:12249285-12249676 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 59 |
| Conread position: | 11-381 |
| Cow position: | chrX:40481384-40480996 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 102 |
| Conread position: | 12-258 |
| Cow position: | chrX:4482438-4482688 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 145 |
| Conread position: | 18-377 |
| Cow position: | chrX:34754700-34754319 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 18-380 |
| Cow position: | chrX:5871810-5872189 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 113 |
| Conread position: | 22-361 |
| Cow position: | chrX:2351559-2351919 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 162 |
| Conread position: | 25-382 |
| Cow position: | chrX:35223803-35224176 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 8 |
| Conread position: | 25-383 |
| Cow position: | chrX:3161513-3161135 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 134 |
| Conread position: | 26-363 |
| Cow position: | chrX:12437730-12437381 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 7 |
| Conread position: | 27-381 |
| Cow position: | chrX:34532033-34532401 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 157 |
| Conread position: | 27-383 |
| Cow position: | chrX:34238222-34238599 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 32-381 |
| Cow position: | chrX:13648277-13647912 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 348 |
| Conread position: | 47-383 |
| Cow position: | chrX:18695403-18695041 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 66 |
| Conread position: | 49-383 |
| Cow position: | chrX:17794517-17794864 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 137 |
| Conread position: | 68-381 |
| Cow position: | chrX:13922985-13923295 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 84, 45 |
| Conread position: | 77-331 |
| Cow position: | chrX:42222016-42221745 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 107 |
| Conread position: | 94-377 |
| Cow position: | chrX:26441211-26440907 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 224 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 58, 104 |
| Conread position: | 113-353 |
| Cow position: | chrX:38577120-38577381 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 38, 181 |
| Conread position: | 116-383 |
| Cow position: | chrX:15147591-15147310 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 5, 37 |
| Conread position: | 146-381 |
| Cow position: | chrX:32978624-32978380 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 189 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 58, 6 |
| Conread position: | 147-361 |
| Cow position: | chrX:25283507-25283289 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 59, 26 |
| Conread position: | 149-381 |
| Cow position: | chrX:31250027-31250266 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 57, 24 |
| Conread position: | 150-363 |
| Cow position: | chrX:40648302-40648522 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 56, 23 |
| Conread position: | 150-377 |
| Cow position: | chrX:32188723-32188487 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 56, 23 |
| Conread position: | 150-381 |
| Cow position: | chrX:25035750-25035511 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 64, 23 |
| Conread position: | 150-381 |
| Cow position: | chrX:34401634-34401871 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 52, 16 |
| Conread position: | 152-367 |
| Cow position: | chrX:5118845-5118624 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 53, 21 |
| Conread position: | 152-383 |
| Cow position: | chrX:11806378-11806138 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 53, 14 |
| Conread position: | 152-383 |
| Cow position: | chrX:33855602-33855354 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 55, 21 |
| Conread position: | 153-383 |
| Cow position: | chrX:917731-917493 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 153-383 |
| Cow position: | chrX:10916393-10916628 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 154-380 |
| Cow position: | chrX:16529645-16529881 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 52, 12 |
| Conread position: | 159-377 |
| Cow position: | chrX:9227340-9227109 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 48, 129 |
| Conread position: | 162-383 |
| Cow position: | chrX:23024351-23024582 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 44, 123 |
| Conread position: | 166-383 |
| Cow position: | chrX:31436131-31436357 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 41, 209 |
| Conread position: | 168-383 |
| Cow position: | chrX:11844585-11844368 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 36, 139 |
| Conread position: | 168-383 |
| Cow position: | chrX:37843373-37843599 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 163 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 169-381 |
| Cow position: | chrX:32747312-32747537 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 170-381 |
| Cow position: | chrX:7718511-7718731 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 264-394 |
| Cow position: | chrX:7710932-7710802 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.