Cow genome map
| Conread name: | Spl1-SPL010020G03 |
| Conread position: | 1-466 |
| Cow position: | chrX:13069884-13069429 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 308 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 62, 76 |
| Conread position: | 1-466 |
| Cow position: | chrX:13090445-13089990 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 308 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 62, 76 |
| Conread position: | 2-375 |
| Cow position: | chrX:23236897-23237262 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 266 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 87, 61 |
| Conread position: | 2-409 |
| Cow position: | chrX:35532710-35533119 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 271 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 129, 58 |
| Conread position: | 3-295 |
| Cow position: | chrX:26341348-26341059 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 28, 61 |
| Conread position: | 3-394 |
| Cow position: | chrX:23279882-23280274 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 263 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 146, 62 |
| Conread position: | 3-415 |
| Cow position: | chrX:1617374-1616963 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 263 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 59, 102 |
| Conread position: | 3-415 |
| Cow position: | chrX:17890050-17890470 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 194 |
| Conread position: | 3-418 |
| Cow position: | chrX:37753278-37753685 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 263 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 140, 60 |
| Conread position: | 3-440 |
| Cow position: | chrX:29849762-29849332 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 289 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 105, 62 |
| Conread position: | 3-461 |
| Cow position: | chrX:29029835-29029387 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 60 |
| Conread position: | 3-462 |
| Cow position: | chrX:17159262-17158807 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 323 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 141, 60 |
| Conread position: | 3-465 |
| Cow position: | chrX:10867001-10866554 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 312 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 142, 61 |
| Conread position: | 3-465 |
| Cow position: | chrX:11744125-11744585 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 301 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 128, 62 |
| Conread position: | 3-466 |
| Cow position: | chrX:29759556-29760004 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 292 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 56, 77 |
| Conread position: | 4-236 |
| Cow position: | chrX:25847679-25847913 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 126, 59 |
| Conread position: | 4-385 |
| Cow position: | chrX:164763-165137 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 268 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 48, 60 |
| Conread position: | 4-405 |
| Cow position: | chrX:20363278-20362880 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 276 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 40, 28 |
| Conread position: | 4-415 |
| Cow position: | chrX:5649548-5649132 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 276 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 61, 100 |
| Conread position: | 10-397 |
| Cow position: | chrX:27451170-27450796 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 257 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 119, 60 |
| Conread position: | 10-465 |
| Cow position: | chrX:10410207-10409772 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 290 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 353, 43 |
| Conread position: | 13-369 |
| Cow position: | chrX:5070705-5070355 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 245 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 203, 50 |
| Conread position: | 13-379 |
| Cow position: | chrX:23974571-23974205 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 262 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 111, 47 |
| Conread position: | 14-387 |
| Cow position: | chrX:37416717-37416349 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 254 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 155, 50 |
| Conread position: | 14-399 |
| Cow position: | chrX:28624888-28624506 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 257 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 135, 51 |
| Conread position: | 32-313 |
| Cow position: | chrX:4429888-4430159 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 75-378 |
| Cow position: | chrX:23352807-23353104 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 9, 58 |
| Conread position: | 79-375 |
| Cow position: | chrX:9402801-9402513 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 141-435 |
| Cow position: | chrX:42954445-42954731 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 173, 33 |
Show alignments to all cow chromosomes.