Cow genome map
| Conread name: | Spl1-SPL010025A02 |
| Conread position: | 1-124 |
| Cow position: | chr1:8287540-8287415 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 2-158 |
| Cow position: | chr1:5023642-5023488 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 3-116 |
| Cow position: | chr1:87149722-87149609 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 91 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-118 |
| Cow position: | chr1:49980802-49980917 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 90 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-119 |
| Cow position: | chr1:15333984-15334098 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 3-119 |
| Cow position: | chr1:91066059-91065947 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 3-120 |
| Cow position: | chr1:20125883-20126006 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 3-121 |
| Cow position: | chr1:90820386-90820268 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-122 |
| Cow position: | chr1:32014289-32014404 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 3-125 |
| Cow position: | chr1:54156642-54156518 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 3-127 |
| Cow position: | chr1:39684053-39683925 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 29, 113 |
| Conread position: | 3-128 |
| Cow position: | chr1:25021982-25021861 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 3-130 |
| Cow position: | chr1:6731273-6731400 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-134 |
| Cow position: | chr1:63994462-63994331 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 30, 109 |
| Conread position: | 3-136 |
| Cow position: | chr1:242650-242779 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 127, 39 |
| Conread position: | 3-136 |
| Cow position: | chr1:22823998-22824135 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 32, 107 |
| Conread position: | 3-136 |
| Cow position: | chr1:47790573-47790439 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 46, 38 |
| Conread position: | 3-140 |
| Cow position: | chr1:41022512-41022650 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 115, 38 |
| Conread position: | 3-141 |
| Cow position: | chr1:43340541-43340402 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 47, 113 |
| Conread position: | 3-141 |
| Cow position: | chr1:79178721-79178862 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 32, 122 |
| Conread position: | 3-141 |
| Cow position: | chr1:95835705-95835564 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 32, 122 |
| Conread position: | 3-145 |
| Cow position: | chr1:99637161-99637013 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 3-146 |
| Cow position: | chr1:25955988-25956134 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 47, 144 |
| Conread position: | 3-149 |
| Cow position: | chr1:1380090-1380240 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 32, 123 |
| Conread position: | 3-151 |
| Cow position: | chr1:16060911-16060766 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 132, 25 |
| Conread position: | 3-154 |
| Cow position: | chr1:46245648-46245486 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 3-156 |
| Cow position: | chr1:31274897-31274742 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 24, 112 |
| Conread position: | 3-157 |
| Cow position: | chr1:38706761-38706605 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 25, 83 |
| Conread position: | 3-157 |
| Cow position: | chr1:65160220-65160376 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 30, 122 |
| Conread position: | 4-148 |
| Cow position: | chr1:31347837-31347695 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 4-153 |
| Cow position: | chr1:89437631-89437483 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 108, 37 |
| Conread position: | 5-119 |
| Cow position: | chr1:3923705-3923594 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 93 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 5-123 |
| Cow position: | chr1:63460973-63461092 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 93 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 5-129 |
| Cow position: | chr1:51292240-51292362 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 96 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 5-129 |
| Cow position: | chr1:95156869-95156743 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 97 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 5-135 |
| Cow position: | chr1:98557024-98556893 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 32, 108 |
| Conread position: | 5-143 |
| Cow position: | chr1:72422314-72422169 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 5-150 |
| Cow position: | chr1:71119615-71119762 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 21, 7 |
| Conread position: | 5-157 |
| Cow position: | chr1:8778240-8778089 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 134, 36 |
| Conread position: | 5-164 |
| Cow position: | chr1:41138049-41137896 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 6-127 |
| Cow position: | chr1:78079821-78079942 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 112, 27 |
| Conread position: | 7-120 |
| Cow position: | chr1:41027171-41027283 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 90 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 7-124 |
| Cow position: | chr1:196908-196793 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 31, 14 |
| Conread position: | 7-124 |
| Cow position: | chr1:42887180-42887067 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 7-127 |
| Cow position: | chr1:73644410-73644289 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 94 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 7-128 |
| Cow position: | chr1:24132966-24132844 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 7-128 |
| Cow position: | chr1:102611624-102611743 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 99 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 104, 34 |
| Conread position: | 7-133 |
| Cow position: | chr1:80423634-80423508 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-136 |
| Cow position: | chr1:96007051-96006922 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 108, 34 |
| Conread position: | 7-139 |
| Cow position: | chr1:95152968-95153102 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 29, 118 |
| Conread position: | 7-144 |
| Cow position: | chr1:70483237-70483099 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 16, 22 |
| Conread position: | 7-146 |
| Cow position: | chr1:54267842-54267701 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 94, 122 |
| Conread position: | 7-146 |
| Cow position: | chr1:79630819-79630684 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 94, 24 |
| Conread position: | 7-157 |
| Cow position: | chr1:23101772-23101922 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 76, 133 |
| Conread position: | 7-163 |
| Cow position: | chr1:6304776-6304623 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 8-124 |
| Cow position: | chr1:81568930-81568813 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 8-139 |
| Cow position: | chr1:42175825-42175956 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 37, 105 |
| Conread position: | 9-124 |
| Cow position: | chr1:82538027-82538142 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 92 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-156 |
| Cow position: | chr1:81477762-81477617 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 9-158 |
| Cow position: | chr1:52429460-52429308 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 10-125 |
| Cow position: | chr1:73940675-73940788 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 92 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 12-124 |
| Cow position: | chr1:48618142-48618032 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 91 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 13-150 |
| Cow position: | chr1:6394660-6394800 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 34, 25 |
| Conread position: | 32-128 |
| Cow position: | chr1:2935288-2935384 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 84 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 33-138 |
| Cow position: | chr1:36875432-36875536 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 86 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 34-138 |
| Cow position: | chr1:22466720-22466614 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 87 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 209-796 |
| Cow position: | chr1:95698179-95698757 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 122 |
Show alignments to all cow chromosomes.