Cow genome map
| Conread name: | Spl1-SPL010025A02 |
| Conread position: | 1-119 |
| Cow position: | chr5:20387264-20387386 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 1-119 |
| Cow position: | chr5:21617569-21617686 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 1-131 |
| Cow position: | chr5:55414326-55414196 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 114, 8 |
| Conread position: | 1-138 |
| Cow position: | chr5:52853082-52853218 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 29, 24 |
| Conread position: | 1-150 |
| Cow position: | chr5:18579003-18579146 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 12, 41 |
| Conread position: | 1-158 |
| Cow position: | chr5:15770345-15770180 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 2-136 |
| Cow position: | chr5:74039892-74039758 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 28, 58 |
| Conread position: | 3-112 |
| Cow position: | chr5:44734612-44734503 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 89 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-119 |
| Cow position: | chr5:41885029-41885145 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-119 |
| Cow position: | chr5:44868470-44868586 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-120 |
| Cow position: | chr5:19752415-19752533 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 3-121 |
| Cow position: | chr5:14419897-14419786 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 3-125 |
| Cow position: | chr5:21375001-21374879 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-128 |
| Cow position: | chr5:42064318-42064449 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 3-128 |
| Cow position: | chr5:58487488-58487613 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-133 |
| Cow position: | chr5:57584989-57585119 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 57, 119 |
| Conread position: | 3-135 |
| Cow position: | chr5:19811635-19811765 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 3-135 |
| Cow position: | chr5:50101261-50101132 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 3-136 |
| Cow position: | chr5:7676042-7675912 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 3-138 |
| Cow position: | chr5:13471221-13471361 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 3-141 |
| Cow position: | chr5:55965781-55965639 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 3-141 |
| Cow position: | chr5:56624404-56624259 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 28, 135 |
| Conread position: | 3-144 |
| Cow position: | chr5:20779285-20779145 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 30, 121 |
| Conread position: | 3-150 |
| Cow position: | chr5:45854610-45854763 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 3-153 |
| Cow position: | chr5:14000758-14000902 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 143, 25 |
| Conread position: | 3-155 |
| Cow position: | chr5:16937916-16937766 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 130, 31 |
| Conread position: | 3-157 |
| Cow position: | chr5:49821541-49821703 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 3-158 |
| Cow position: | chr5:24108947-24108788 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 3-158 |
| Cow position: | chr5:45337308-45337149 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 30, 16 |
| Conread position: | 4-127 |
| Cow position: | chr5:43858306-43858179 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 4-134 |
| Cow position: | chr5:44796619-44796489 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 118, 59 |
| Conread position: | 5-119 |
| Cow position: | chr5:69383370-69383482 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 5-120 |
| Cow position: | chr5:15077519-15077401 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 5-134 |
| Cow position: | chr5:18289237-18289362 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 5-137 |
| Cow position: | chr5:17254109-17253982 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 5-142 |
| Cow position: | chr5:4280563-4280699 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 110, 37 |
| Conread position: | 5-152 |
| Cow position: | chr5:58401684-58401827 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 129, 36 |
| Conread position: | 5-157 |
| Cow position: | chr5:4728189-4728343 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 118, 36 |
| Conread position: | 7-112 |
| Cow position: | chr5:60523849-60523951 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 88 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 7-117 |
| Cow position: | chr5:55956030-55956139 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 92 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 7-133 |
| Cow position: | chr5:36038884-36038763 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 7-135 |
| Cow position: | chr5:6876849-6876720 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 27, 106 |
| Conread position: | 7-135 |
| Cow position: | chr5:35246993-35246861 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 28, 119 |
| Conread position: | 7-140 |
| Cow position: | chr5:12557170-12557035 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 7-140 |
| Cow position: | chr5:26549023-26548892 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 7-144 |
| Cow position: | chr5:3627062-3626924 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 10-126 |
| Cow position: | chr5:8149187-8149073 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 95 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 25-152 |
| Cow position: | chr5:51018845-51018972 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 86, 13 |
Show alignments to all cow chromosomes.