Cow genome map

Conread name: Spl1-SPL010025A02

Conread position: 1-112
Cow position: chrX:35382925-35382816 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 90
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 49, 0

Conread position: 1-122
Cow position: chrX:38094408-38094290 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 97
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 27, 0

Conread position: 2-117
Cow position: chrX:10479861-10479981 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 98
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 6, 0

Conread position: 3-115
Cow position: chrX:19356577-19356693 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 30, 0

Conread position: 3-119
Cow position: chrX:3494933-3494817 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 101
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 3-119
Cow position: chrX:41166711-41166596 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 95
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 28, 11

Conread position: 3-124
Cow position: chrX:19018717-19018590 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 104
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 34, 0

Conread position: 3-126
Cow position: chrX:1122433-1122307 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 100
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 34, 92

Conread position: 3-127
Cow position: chrX:36356219-36356343 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 99
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 47, 110

Conread position: 3-128
Cow position: chrX:42247068-42246940 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 104
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 32, 115

Conread position: 3-140
Cow position: chrX:27446800-27446935 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 106
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 120, 0

Conread position: 3-140
Cow position: chrX:38218830-38218969 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 114
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 118, 0

Conread position: 3-140
Cow position: chrX:46909929-46910060 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 108
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 37, 0

Conread position: 3-143
Cow position: chrX:40556344-40556207 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 108
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 126, 51

Conread position: 3-145
Cow position: chrX:1571475-1571337 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 112
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 136, 38

Conread position: 3-145
Cow position: chrX:4559847-4559987 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 116
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 33, 113

Conread position: 3-153
Cow position: chrX:20339780-20339630 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 33, 83

Conread position: 3-153
Cow position: chrX:40337024-40337176 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 32, 112

Conread position: 3-157
Cow position: chrX:35885613-35885460 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 116
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 114, 37

Conread position: 3-163
Cow position: chrX:42875326-42875491 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 134
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 113, 0

Conread position: 4-127
Cow position: chrX:12290834-12290962 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 101
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 31, 0

Conread position: 4-134
Cow position: chrX:46068644-46068514 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 106
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 115, 29

Conread position: 5-119
Cow position: chrX:23497575-23497464 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 94
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 14, 0

Conread position: 5-124
Cow position: chrX:38727022-38726907 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 96
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 30, 0

Conread position: 5-141
Cow position: chrX:38080263-38080400 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 111
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 30, 120

Conread position: 6-134
Cow position: chrX:8759739-8759871 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 108
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 30, 0

Conread position: 6-138
Cow position: chrX:45759788-45759923 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 61, 0

Conread position: 6-151
Cow position: chrX:42449897-42449745 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 118
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 29, 0

Conread position: 7-119
Cow position: chrX:28940363-28940477 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 92
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 26, 0

Conread position: 7-123
Cow position: chrX:31279806-31279691 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 92
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 104, 0

Conread position: 7-125
Cow position: chrX:11633800-11633919 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 98
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 23, 107

Conread position: 7-128
Cow position: chrX:11656199-11656318 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 103
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 28, 37

Conread position: 7-134
Cow position: chrX:40108225-40108096 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 99
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 7-140
Cow position: chrX:14135796-14135929 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 119, 104

Conread position: 7-156
Cow position: chrX:43028350-43028500 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 111
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 146, 0

Conread position: 9-141
Cow position: chrX:27668838-27668708 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 101
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 64, 0

Conread position: 12-127
Cow position: chrX:4399242-4399358 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 94
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 25, 101

Conread position: 13-117
Cow position: chrX:33865173-33865066 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 89
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 9, 0

Conread position: 13-157
Cow position: chrX:15546006-15546151 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 23, 15

Conread position: 42-153
Cow position: chrX:25282858-25282748 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 89
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 69, 0

Show alignments to all cow chromosomes.