Cow genome map
| Conread name: | Spl1-SPL01C060046 |
| Conread position: | 1-184 |
| Cow position: | chr10:10581513-10581693 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-197 |
| Cow position: | chr10:13366013-13365817 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 29, 86 |
| Conread position: | 1-313 |
| Cow position: | chr10:60489506-60489803 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 1-393 |
| Cow position: | chr10:276433-276817 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1-422 |
| Cow position: | chr10:19143499-19143081 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 32 |
| Conread position: | 1-427 |
| Cow position: | chr10:29633019-29632601 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 1-478 |
| Cow position: | chr10:7282843-7282374 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-483 |
| Cow position: | chr10:124149-124628 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-483 |
| Cow position: | chr10:1375376-1375851 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 410, 32 |
| Conread position: | 1-483 |
| Cow position: | chr10:8289823-8290296 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-483 |
| Cow position: | chr10:19511445-19511924 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-483 |
| Cow position: | chr10:22101081-22101548 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-483 |
| Cow position: | chr10:25359239-25359717 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-483 |
| Cow position: | chr10:62409012-62408539 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-503 |
| Cow position: | chr10:25498195-25498690 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 1-503 |
| Cow position: | chr10:62216446-62216945 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 473, 29 |
| Conread position: | 1-503 |
| Cow position: | chr10:62778183-62778686 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 82 |
| Conread position: | 1-510 |
| Cow position: | chr10:34685735-34686239 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 434, 29 |
| Conread position: | 1-526 |
| Cow position: | chr10:21486756-21487276 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-526 |
| Cow position: | chr10:32650572-32651094 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-570 |
| Cow position: | chr10:184105-184676 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 20 |
| Conread position: | 1-586 |
| Cow position: | chr10:63841153-63841726 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 30 |
| Conread position: | 1-587 |
| Cow position: | chr10:24299012-24298436 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 497, 27 |
| Conread position: | 1-593 |
| Cow position: | chr10:14859817-14860393 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 29 |
| Conread position: | 2-503 |
| Cow position: | chr10:29696082-29696569 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 5-241 |
| Cow position: | chr10:65307967-65308201 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 178 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 5-288 |
| Cow position: | chr10:29846766-29846485 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 5-371 |
| Cow position: | chr10:54059508-54059150 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 5-462 |
| Cow position: | chr10:38538650-38538196 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 8 |
| Conread position: | 5-496 |
| Cow position: | chr10:32578147-32578620 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 28 |
| Conread position: | 5-504 |
| Cow position: | chr10:21400828-21400328 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 486, 28 |
| Conread position: | 5-504 |
| Cow position: | chr10:25565402-25564915 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 486, 28 |
| Conread position: | 5-504 |
| Cow position: | chr10:41566954-41567445 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 16 |
| Conread position: | 5-504 |
| Cow position: | chr10:41876762-41877261 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 486, 28 |
| Conread position: | 5-541 |
| Cow position: | chr10:11685820-11685293 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 486, 26 |
| Conread position: | 5-541 |
| Cow position: | chr10:14803678-14804216 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 28 |
| Conread position: | 5-541 |
| Cow position: | chr10:39179627-39180163 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 28 |
| Conread position: | 5-541 |
| Cow position: | chr10:39817506-39816983 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 486, 28 |
| Conread position: | 5-541 |
| Cow position: | chr10:41157294-41157827 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 486, 28 |
| Conread position: | 8-502 |
| Cow position: | chr10:10478297-10477798 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 250, 22 |
| Conread position: | 10-541 |
| Cow position: | chr10:19496429-19495906 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 23 |
| Conread position: | 14-806 |
| Cow position: | chr10:38546370-38545590 (view UCSC Genome Browser custom track) |
| Alignm length: | 799 |
| Alignm identity: | 581 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 16 |
| Conread position: | 15-483 |
| Cow position: | chr10:2123410-2122944 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 28 |
| Conread position: | 15-583 |
| Cow position: | chr10:44294697-44295253 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 13 |
| Conread position: | 17-456 |
| Cow position: | chr10:39904779-39905232 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 71 |
| Conread position: | 18-486 |
| Cow position: | chr10:47906634-47907099 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 250, 15 |
| Conread position: | 18-489 |
| Cow position: | chr10:21740895-21740428 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 22-499 |
| Cow position: | chr10:46694518-46694044 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 8 |
| Conread position: | 23-504 |
| Cow position: | chr10:4192358-4191883 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 65 |
| Conread position: | 28-586 |
| Cow position: | chr10:38847235-38847764 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 252, 55 |
| Conread position: | 32-593 |
| Cow position: | chr10:15862265-15861705 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 498, 56 |
| Conread position: | 39-593 |
| Cow position: | chr10:46191244-46191781 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 482, 49 |
| Conread position: | 43-503 |
| Cow position: | chr10:39854134-39853672 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 43 |
| Conread position: | 57-532 |
| Cow position: | chr10:14951795-14952236 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 323 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 211, 10 |
| Conread position: | 65-483 |
| Cow position: | chr10:16925437-16925853 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 21 |
| Conread position: | 125-503 |
| Cow position: | chr10:40152496-40152116 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 185 |
| Conread position: | 141-366 |
| Cow position: | chr10:54979903-54979682 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 78, 39 |
| Conread position: | 147-587 |
| Cow position: | chr10:49310489-49310909 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 386, 65 |
| Conread position: | 202-595 |
| Cow position: | chr10:33346639-33347029 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 229-593 |
| Cow position: | chr10:8328209-8327846 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 181 |
| Conread position: | 273-806 |
| Cow position: | chr10:42628732-42629260 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 398, 75 |
| Conread position: | 278-806 |
| Cow position: | chr10:31523913-31524416 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 364, 73 |
| Conread position: | 289-567 |
| Cow position: | chr10:60192256-60192534 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 201 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 151, 61 |
| Conread position: | 335-586 |
| Cow position: | chr10:22842921-22843172 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 197, 13 |
| Conread position: | 356-656 |
| Cow position: | chr10:54979280-54978982 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 123 |
| Conread position: | 391-544 |
| Cow position: | chr10:42679599-42679754 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 396-503 |
| Cow position: | chr10:24061575-24061468 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 90 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 408-606 |
| Cow position: | chr10:28931570-28931370 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 85, 30 |
| Conread position: | 421-593 |
| Cow position: | chr10:60489850-60490022 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 109, 38 |
| Conread position: | 437-693 |
| Cow position: | chr10:8339168-8339423 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 33 |
| Conread position: | 591-803 |
| Cow position: | chr10:28931299-28931087 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 83, 46 |
| Conread position: | 591-806 |
| Cow position: | chr10:33347113-33347333 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 673-806 |
| Cow position: | chr10:13364341-13364210 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 673-806 |
| Cow position: | chr10:13365531-13365400 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 95, 0 |
Show alignments to all cow chromosomes.