Cow genome map
| Conread name: | Spl1-SPL01C060046 |
| Conread position: | 1-203 |
| Cow position: | chr11:11126397-11126592 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 191, 11 |
| Conread position: | 1-255 |
| Cow position: | chr11:77235239-77235495 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 189 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 32, 88 |
| Conread position: | 1-380 |
| Cow position: | chr11:15998376-15998746 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-445 |
| Cow position: | chr11:44861047-44860611 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-455 |
| Cow position: | chr11:30125769-30125335 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1-478 |
| Cow position: | chr11:77729048-77728569 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 340, 32 |
| Conread position: | 1-479 |
| Cow position: | chr11:58133850-58134340 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 24 |
| Conread position: | 1-481 |
| Cow position: | chr11:19103008-19102532 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-482 |
| Cow position: | chr11:12358944-12358470 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-483 |
| Cow position: | chr11:4271389-4270905 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 430, 24 |
| Conread position: | 1-483 |
| Cow position: | chr11:37093584-37093106 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-485 |
| Cow position: | chr11:85394331-85393853 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 1-486 |
| Cow position: | chr11:7113079-7113553 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 338, 29 |
| Conread position: | 1-489 |
| Cow position: | chr11:29669151-29668669 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-499 |
| Cow position: | chr11:28063168-28063648 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 27 |
| Conread position: | 1-503 |
| Cow position: | chr11:8887672-8887182 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-503 |
| Cow position: | chr11:21466554-21467053 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1-525 |
| Cow position: | chr11:12351585-12351064 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 32 |
| Conread position: | 1-526 |
| Cow position: | chr11:10846922-10847441 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-526 |
| Cow position: | chr11:71329122-71329643 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-570 |
| Cow position: | chr11:29234167-29233622 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 30 |
| Conread position: | 2-503 |
| Cow position: | chr11:75919900-75920378 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 2-544 |
| Cow position: | chr11:17220733-17220198 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 89 |
| Conread position: | 5-253 |
| Cow position: | chr11:9736470-9736225 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 124, 29 |
| Conread position: | 5-442 |
| Cow position: | chr11:10210481-10210048 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 22 |
| Conread position: | 5-482 |
| Cow position: | chr11:26125446-26124976 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 12 |
| Conread position: | 5-483 |
| Cow position: | chr11:44157751-44157297 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 5-489 |
| Cow position: | chr11:53287973-53287494 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 5-489 |
| Cow position: | chr11:57628565-57628084 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 5-499 |
| Cow position: | chr11:8262214-8261732 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 5-502 |
| Cow position: | chr11:9607093-9606603 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 243, 28 |
| Conread position: | 5-502 |
| Cow position: | chr11:20921264-20920770 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 5-502 |
| Cow position: | chr11:36744696-36744205 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 5-502 |
| Cow position: | chr11:44895535-44895029 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 335 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 191, 25 |
| Conread position: | 5-504 |
| Cow position: | chr11:28230267-28229776 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 28 |
| Conread position: | 5-504 |
| Cow position: | chr11:67449979-67450479 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 28 |
| Conread position: | 5-526 |
| Cow position: | chr11:38835935-38835432 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 29 |
| Conread position: | 5-541 |
| Cow position: | chr11:17108204-17107668 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 486, 28 |
| Conread position: | 5-541 |
| Cow position: | chr11:19064768-19064231 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 263, 28 |
| Conread position: | 5-541 |
| Cow position: | chr11:32450349-32450885 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 486, 28 |
| Conread position: | 5-541 |
| Cow position: | chr11:52418873-52419406 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 250, 16 |
| Conread position: | 5-541 |
| Cow position: | chr11:67847086-67846553 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 486, 28 |
| Conread position: | 10-504 |
| Cow position: | chr11:15983110-15983605 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 481, 23 |
| Conread position: | 14-503 |
| Cow position: | chr11:45110851-45111345 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 14 |
| Conread position: | 15-489 |
| Cow position: | chr11:63660090-63659626 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 17-503 |
| Cow position: | chr11:37492155-37491670 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 13 |
| Conread position: | 18-456 |
| Cow position: | chr11:44496103-44495666 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 25 |
| Conread position: | 18-486 |
| Cow position: | chr11:4041569-4041117 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 21-177 |
| Cow position: | chr11:17280745-17280593 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 6, 67 |
| Conread position: | 21-461 |
| Cow position: | chr11:9157929-9157499 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 21-503 |
| Cow position: | chr11:9659902-9659411 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 246, 67 |
| Conread position: | 21-504 |
| Cow position: | chr11:34020400-34020867 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 352, 61 |
| Conread position: | 24-504 |
| Cow position: | chr11:25527072-25527537 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 64 |
| Conread position: | 28-496 |
| Cow position: | chr11:54209122-54209582 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 59 |
| Conread position: | 32-693 |
| Cow position: | chr11:8282586-8283233 (view UCSC Genome Browser custom track) |
| Alignm length: | 665 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 57 |
| Conread position: | 60-800 |
| Cow position: | chr11:10089871-10090614 (view UCSC Genome Browser custom track) |
| Alignm length: | 754 |
| Alignm identity: | 558 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 301, 26 |
| Conread position: | 84-532 |
| Cow position: | chr11:66726024-66726476 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 130 |
| Conread position: | 93-255 |
| Cow position: | chr11:46962849-46962692 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 113-489 |
| Cow position: | chr11:5343630-5343255 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 0 |
| Conread position: | 113-503 |
| Cow position: | chr11:37065536-37065142 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 115 |
| Conread position: | 144-397 |
| Cow position: | chr11:32684907-32685154 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 226-509 |
| Cow position: | chr11:48084813-48085092 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 184, 122 |
| Conread position: | 289-556 |
| Cow position: | chr11:4065471-4065199 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 0 |
| Conread position: | 310-499 |
| Cow position: | chr11:9220336-9220147 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 156 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 43 |
| Conread position: | 321-747 |
| Cow position: | chr11:7316668-7317092 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 27 |
| Conread position: | 336-586 |
| Cow position: | chr11:59433358-59433101 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 28, 100 |
| Conread position: | 379-499 |
| Cow position: | chr11:59369460-59369580 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 389-503 |
| Cow position: | chr11:8267680-8267566 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 97 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 404-579 |
| Cow position: | chr11:10050589-10050764 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 114, 15 |
| Conread position: | 460-653 |
| Cow position: | chr11:30125106-30124909 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 475-806 |
| Cow position: | chr11:7113836-7114152 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 197, 18 |
Show alignments to all cow chromosomes.