Cow genome map
| Conread name: | Spl1-SPL01C060046 |
| Conread position: | 1-190 |
| Cow position: | chr13:4482020-4482201 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-260 |
| Cow position: | chr13:32544491-32544742 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 193 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 251, 32 |
| Conread position: | 1-293 |
| Cow position: | chr13:34868313-34868606 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 34 |
| Conread position: | 1-362 |
| Cow position: | chr13:2232203-2232562 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-482 |
| Cow position: | chr13:2908900-2908428 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 437, 30 |
| Conread position: | 1-483 |
| Cow position: | chr13:9044054-9044522 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 32 |
| Conread position: | 1-483 |
| Cow position: | chr13:15924839-15924362 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-483 |
| Cow position: | chr13:34042821-34042347 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-485 |
| Cow position: | chr13:32738275-32737798 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 1-497 |
| Cow position: | chr13:34911822-34911343 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 1-499 |
| Cow position: | chr13:34187144-34186649 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 29 |
| Conread position: | 1-503 |
| Cow position: | chr13:30657417-30656935 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 1-503 |
| Cow position: | chr13:33825184-33824693 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 27 |
| Conread position: | 1-503 |
| Cow position: | chr13:33928015-33927545 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-503 |
| Cow position: | chr13:34692706-34693207 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 396, 29 |
| Conread position: | 1-503 |
| Cow position: | chr13:56730735-56730245 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 30 |
| Conread position: | 1-504 |
| Cow position: | chr13:15520970-15520472 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-526 |
| Cow position: | chr13:31612792-31612271 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 373, 32 |
| Conread position: | 1-806 |
| Cow position: | chr13:34936682-34937500 (view UCSC Genome Browser custom track) |
| Alignm length: | 827 |
| Alignm identity: | 596 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 88 |
| Conread position: | 2-478 |
| Cow position: | chr13:6668579-6668106 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 2-524 |
| Cow position: | chr13:34326131-34325611 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 17 |
| Conread position: | 5-171 |
| Cow position: | chr13:3058445-3058281 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 5-414 |
| Cow position: | chr13:30245186-30244780 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 5-489 |
| Cow position: | chr13:50109014-50109490 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 5-504 |
| Cow position: | chr13:2297251-2296764 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 486, 28 |
| Conread position: | 5-505 |
| Cow position: | chr13:21840647-21840147 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 262, 28 |
| Conread position: | 6-483 |
| Cow position: | chr13:35756789-35757263 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 7-452 |
| Cow position: | chr13:23003966-23003527 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 7-503 |
| Cow position: | chr13:3276707-3277196 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 21-501 |
| Cow position: | chr13:22186161-22185699 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 63 |
| Conread position: | 21-541 |
| Cow position: | chr13:13324315-13324833 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 10 |
| Conread position: | 23-799 |
| Cow position: | chr13:20542800-20542039 (view UCSC Genome Browser custom track) |
| Alignm length: | 784 |
| Alignm identity: | 594 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 648, 56 |
| Conread position: | 28-500 |
| Cow position: | chr13:31832171-31832636 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 31-799 |
| Cow position: | chr13:54284155-54284910 (view UCSC Genome Browser custom track) |
| Alignm length: | 779 |
| Alignm identity: | 584 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 354, 55 |
| Conread position: | 37-574 |
| Cow position: | chr13:30063712-30064225 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 234, 51 |
| Conread position: | 113-585 |
| Cow position: | chr13:34767622-34767175 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 125-489 |
| Cow position: | chr13:2389157-2388790 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 219 |
| Conread position: | 133-578 |
| Cow position: | chr13:11764560-11764140 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 295 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 187, 51 |
| Conread position: | 225-564 |
| Cow position: | chr13:4178886-4178543 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 267, 123 |
| Conread position: | 288-503 |
| Cow position: | chr13:32524979-32524754 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 49, 19 |
| Conread position: | 326-501 |
| Cow position: | chr13:34868606-34868783 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 147 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 23, 92 |
| Conread position: | 328-585 |
| Cow position: | chr13:34111163-34111407 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 192 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 194, 20 |
| Conread position: | 370-806 |
| Cow position: | chr13:15451647-15451221 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 305, 112 |
| Conread position: | 462-806 |
| Cow position: | chr13:26843794-26844118 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 248 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 234, 38 |
| Conread position: | 591-796 |
| Cow position: | chr13:11064605-11064398 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 81, 0 |
Show alignments to all cow chromosomes.