Cow genome map
| Conread name: | Spl1-SPL01C060046 |
| Conread position: | 1-235 |
| Cow position: | chr14:45160285-45160519 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 185, 27 |
| Conread position: | 1-483 |
| Cow position: | chr14:13302451-13302926 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 32 |
| Conread position: | 1-483 |
| Cow position: | chr14:17684815-17685295 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 432, 32 |
| Conread position: | 1-483 |
| Cow position: | chr14:20781876-20782354 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-483 |
| Cow position: | chr14:22032262-22031789 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1-489 |
| Cow position: | chr14:19328846-19328364 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1-497 |
| Cow position: | chr14:38532878-38532380 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 88 |
| Conread position: | 1-497 |
| Cow position: | chr14:44421978-44422466 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 1-500 |
| Cow position: | chr14:45850648-45851137 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1-502 |
| Cow position: | chr14:17001635-17001142 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-503 |
| Cow position: | chr14:7831119-7830622 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 24 |
| Conread position: | 1-503 |
| Cow position: | chr14:13660567-13660068 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 446, 29 |
| Conread position: | 1-503 |
| Cow position: | chr14:23690804-23690311 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 258, 27 |
| Conread position: | 1-503 |
| Cow position: | chr14:36967679-36968173 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-503 |
| Cow position: | chr14:37223322-37223819 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 1-503 |
| Cow position: | chr14:45205493-45205995 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 24 |
| Conread position: | 1-503 |
| Cow position: | chr14:45712555-45712073 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1-503 |
| Cow position: | chr14:45767426-45767920 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-504 |
| Cow position: | chr14:44856005-44855508 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 29 |
| Conread position: | 1-510 |
| Cow position: | chr14:28994435-28993929 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 1-523 |
| Cow position: | chr14:44225834-44226335 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 1-536 |
| Cow position: | chr14:44376856-44377389 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 344, 30 |
| Conread position: | 1-581 |
| Cow position: | chr14:47589293-47589860 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 88 |
| Conread position: | 1-806 |
| Cow position: | chr14:40339130-40339890 (view UCSC Genome Browser custom track) |
| Alignm length: | 809 |
| Alignm identity: | 588 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 472, 20 |
| Conread position: | 1-806 |
| Cow position: | chr14:46084045-46084838 (view UCSC Genome Browser custom track) |
| Alignm length: | 816 |
| Alignm identity: | 566 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 525, 42 |
| Conread position: | 2-378 |
| Cow position: | chr14:45079955-45080313 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 2-483 |
| Cow position: | chr14:44685469-44685941 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 2-497 |
| Cow position: | chr14:42151745-42152236 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 490, 28 |
| Conread position: | 5-485 |
| Cow position: | chr14:13272682-13273147 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 5-489 |
| Cow position: | chr14:45029689-45029220 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 5-503 |
| Cow position: | chr14:45916824-45917336 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 28 |
| Conread position: | 5-537 |
| Cow position: | chr14:30585512-30584996 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 488, 28 |
| Conread position: | 5-541 |
| Cow position: | chr14:33394352-33393819 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 486, 28 |
| Conread position: | 5-541 |
| Cow position: | chr14:45672621-45672085 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 486, 28 |
| Conread position: | 5-568 |
| Cow position: | chr14:23901377-23900817 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 486, 28 |
| Conread position: | 5-756 |
| Cow position: | chr14:35387706-35386982 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 565 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 26 |
| Conread position: | 6-485 |
| Cow position: | chr14:2283764-2284239 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 6-489 |
| Cow position: | chr14:9044990-9045470 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 27 |
| Conread position: | 6-593 |
| Cow position: | chr14:22018830-22019398 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 19 |
| Conread position: | 6-716 |
| Cow position: | chr14:45303935-45303234 (view UCSC Genome Browser custom track) |
| Alignm length: | 714 |
| Alignm identity: | 541 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 485, 22 |
| Conread position: | 8-526 |
| Cow position: | chr14:48254885-48254364 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 25 |
| Conread position: | 14-199 |
| Cow position: | chr14:1500460-1500645 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 17, 75 |
| Conread position: | 14-503 |
| Cow position: | chr14:46464503-46464990 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 257, 17 |
| Conread position: | 18-423 |
| Cow position: | chr14:41755298-41755682 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 15 |
| Conread position: | 18-504 |
| Cow position: | chr14:29048464-29047980 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 250, 15 |
| Conread position: | 18-538 |
| Cow position: | chr14:45833598-45834109 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 16 |
| Conread position: | 18-572 |
| Cow position: | chr14:35928612-35929162 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 69 |
| Conread position: | 19-569 |
| Cow position: | chr14:16845883-16846421 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 12 |
| Conread position: | 21-483 |
| Cow position: | chr14:5528501-5528960 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 28-499 |
| Cow position: | chr14:44130366-44130827 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 29-593 |
| Cow position: | chr14:12608655-12609189 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 393, 66 |
| Conread position: | 43-559 |
| Cow position: | chr14:31887139-31887656 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 437, 45 |
| Conread position: | 44-503 |
| Cow position: | chr14:30596916-30596466 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 15 |
| Conread position: | 58-574 |
| Cow position: | chr14:14309598-14309073 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 45 |
| Conread position: | 69-503 |
| Cow position: | chr14:41085296-41084861 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 18 |
| Conread position: | 84-483 |
| Cow position: | chr14:13864581-13864184 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 16 |
| Conread position: | 106-573 |
| Cow position: | chr14:9102571-9102134 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 59 |
| Conread position: | 114-585 |
| Cow position: | chr14:41407352-41407817 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 422, 233 |
| Conread position: | 132-585 |
| Cow position: | chr14:37414340-37413896 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 220 |
| Conread position: | 136-497 |
| Cow position: | chr14:13480175-13479822 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 192-483 |
| Cow position: | chr14:44287642-44287352 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 0 |
| Conread position: | 238-573 |
| Cow position: | chr14:38146238-38146565 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 298, 110 |
| Conread position: | 253-503 |
| Cow position: | chr14:45771105-45770861 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 289-598 |
| Cow position: | chr14:33675517-33675826 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 5 |
| Conread position: | 334-587 |
| Cow position: | chr14:45235755-45236007 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 19, 73 |
| Conread position: | 343-574 |
| Cow position: | chr14:33235722-33235955 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 116, 122 |
| Conread position: | 519-806 |
| Cow position: | chr14:17764877-17764573 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 217 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 85, 288 |
| Conread position: | 572-806 |
| Cow position: | chr14:44377466-44377699 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 173 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 100, 189 |
| Conread position: | 591-806 |
| Cow position: | chr14:33675909-33676114 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 65, 102 |
Show alignments to all cow chromosomes.