Cow genome map

Conread name: Spl1-SPL01C060046

Conread position: 1-219
Cow position: chr15:10787670-10787460 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 174
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 125, 16

Conread position: 1-226
Cow position: chr15:6371418-6371206 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 166
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 29, 0

Conread position: 1-315
Cow position: chr15:55622-55934 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 250, 33

Conread position: 1-368
Cow position: chr15:21816326-21815960 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 29

Conread position: 1-456
Cow position: chr15:3261983-3261543 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 264, 41

Conread position: 1-481
Cow position: chr15:12421742-12421268 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 1-483
Cow position: chr15:7836663-7837143 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 34

Conread position: 1-483
Cow position: chr15:17039830-17039358 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 1-483
Cow position: chr15:42936135-42936613 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-489
Cow position: chr15:4677917-4678382 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 30

Conread position: 1-489
Cow position: chr15:19738628-19738148 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 264, 20

Conread position: 1-490
Cow position: chr15:3038099-3037605 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 95

Conread position: 1-490
Cow position: chr15:8098910-8099394 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 434, 36

Conread position: 1-502
Cow position: chr15:4630487-4630001 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 0

Conread position: 1-502
Cow position: chr15:4670841-4671347 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 18

Conread position: 1-503
Cow position: chr15:690216-690709 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 37

Conread position: 1-503
Cow position: chr15:2076077-2076567 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 264, 41

Conread position: 1-503
Cow position: chr15:4649258-4649746 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 0

Conread position: 1-503
Cow position: chr15:4733283-4733778 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 1-503
Cow position: chr15:6277834-6277340 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 84

Conread position: 1-503
Cow position: chr15:7523083-7522574 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 29

Conread position: 1-503
Cow position: chr15:7544301-7544801 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 1-503
Cow position: chr15:17291877-17292359 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 491, 32

Conread position: 1-503
Cow position: chr15:18576145-18576633 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-503
Cow position: chr15:21960934-21961427 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 1-503
Cow position: chr15:35747717-35748213 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 90

Conread position: 1-503
Cow position: chr15:36648335-36648827 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 1-504
Cow position: chr15:4170270-4169778 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 27

Conread position: 1-523
Cow position: chr15:41365604-41366115 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 511, 29

Conread position: 1-525
Cow position: chr15:1763513-1764033 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 30

Conread position: 1-525
Cow position: chr15:6078153-6078684 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 52

Conread position: 1-525
Cow position: chr15:8749854-8750369 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 465, 32

Conread position: 1-526
Cow position: chr15:15347699-15347177 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-526
Cow position: chr15:21666325-21665804 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-526
Cow position: chr15:31358324-31358828 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 32

Conread position: 1-572
Cow position: chr15:11624341-11624893 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 357, 29

Conread position: 1-586
Cow position: chr15:15266233-15265657 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 96

Conread position: 1-586
Cow position: chr15:40104892-40105465 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 27

Conread position: 1-587
Cow position: chr15:12614487-12615066 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 87

Conread position: 1-588
Cow position: chr15:324369-324941 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 493, 10

Conread position: 1-806
Cow position: chr15:35648793-35648020 (view UCSC Genome Browser custom track)
Alignm length: 807
Alignm identity: 609
Alignm E-value: 0
Alignm gaps (pig, cow): 668, 29

Conread position: 2-600
Cow position: chr15:17787735-17787152 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 28

Conread position: 4-282
Cow position: chr15:11598690-11598414 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 5-182
Cow position: chr15:32709970-32710145 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 128
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 28, 0

Conread position: 5-203
Cow position: chr15:50144931-50145123 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 145
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 28, 0

Conread position: 5-245
Cow position: chr15:13871190-13871428 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 5-356
Cow position: chr15:22204688-22204340 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 5-362
Cow position: chr15:13428469-13428818 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 5-479
Cow position: chr15:2648231-2647760 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 5-483
Cow position: chr15:4384700-4385167 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 5-485
Cow position: chr15:7260053-7260527 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 367, 29

Conread position: 5-486
Cow position: chr15:29009268-29009742 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 5-489
Cow position: chr15:20748841-20749321 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 5-489
Cow position: chr15:42320990-42320515 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 26

Conread position: 5-496
Cow position: chr15:4195888-4196377 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 488, 28

Conread position: 5-497
Cow position: chr15:6472485-6472003 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 249, 29

Conread position: 5-497
Cow position: chr15:53338463-53338937 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 26

Conread position: 5-502
Cow position: chr15:7233737-7234221 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 432, 29

Conread position: 5-502
Cow position: chr15:36970349-36970843 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 5-504
Cow position: chr15:1781679-1782179 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 486, 26

Conread position: 5-504
Cow position: chr15:2011509-2012006 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 29

Conread position: 5-504
Cow position: chr15:18268562-18268062 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 486, 28

Conread position: 5-513
Cow position: chr15:35734886-35735388 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 457, 19

Conread position: 5-806
Cow position: chr15:36642056-36642824 (view UCSC Genome Browser custom track)
Alignm length: 807
Alignm identity: 628
Alignm E-value: 0
Alignm gaps (pig, cow): 653, 23

Conread position: 6-496
Cow position: chr15:8000816-8000320 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 22

Conread position: 6-806
Cow position: chr15:24793483-24794258 (view UCSC Genome Browser custom track)
Alignm length: 807
Alignm identity: 591
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 17

Conread position: 7-525
Cow position: chr15:7894771-7894288 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 509, 21

Conread position: 8-616
Cow position: chr15:8407990-8408587 (view UCSC Genome Browser custom track)
Alignm length: 615
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 23

Conread position: 9-489
Cow position: chr15:4811752-4812224 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 32

Conread position: 9-517
Cow position: chr15:4961083-4961562 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 22

Conread position: 13-432
Cow position: chr15:44828249-44828663 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 335, 13

Conread position: 15-490
Cow position: chr15:4795116-4795583 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 12

Conread position: 18-548
Cow position: chr15:28490708-28490173 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 16

Conread position: 21-525
Cow position: chr15:37391943-37392435 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 12

Conread position: 22-587
Cow position: chr15:36627210-36626666 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 66

Conread position: 23-541
Cow position: chr15:3010408-3009889 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 10

Conread position: 31-532
Cow position: chr15:17271928-17271445 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 56

Conread position: 32-560
Cow position: chr15:51671807-51672328 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 56

Conread position: 81-502
Cow position: chr15:25789468-25789051 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 0

Conread position: 94-537
Cow position: chr15:1834948-1834504 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 149

Conread position: 118-503
Cow position: chr15:7922106-7921723 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 225

Conread position: 158-585
Cow position: chr15:24715806-24716220 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 46

Conread position: 189-572
Cow position: chr15:6621950-6622324 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 344, 45

Conread position: 191-503
Cow position: chr15:6370167-6369860 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 0

Conread position: 195-585
Cow position: chr15:1236933-1237320 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 103

Conread position: 209-571
Cow position: chr15:11299183-11298828 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 245
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 176, 25

Conread position: 229-775
Cow position: chr15:370035-369497 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 121

Conread position: 238-574
Cow position: chr15:7934006-7934332 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 243
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 254, 70

Conread position: 313-574
Cow position: chr15:6650259-6650008 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 192
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 179, 35

Conread position: 326-569
Cow position: chr15:12453160-12453396 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 165
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 23, 0

Conread position: 356-503
Cow position: chr15:5068623-5068770 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 124
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 412-698
Cow position: chr15:32679748-32679470 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 208
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 11, 211

Conread position: 451-556
Cow position: chr15:51801566-51801672 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 90
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 80, 0

Show alignments to all cow chromosomes.