Cow genome map
Conread name: | Spl1-SPL01C060046 |
Conread position: | 1-160 |
Cow position: | chr16:56320912-56321069 (view UCSC Genome Browser custom track) |
Alignm length: | 160 |
Alignm identity: | 115 |
Alignm E-value: | 5e-22 |
Alignm gaps (pig, cow): | 32, 0 |
Conread position: | 1-200 |
Cow position: | chr16:16687944-16688141 (view UCSC Genome Browser custom track) |
Alignm length: | 201 |
Alignm identity: | 146 |
Alignm E-value: | 1e-30 |
Alignm gaps (pig, cow): | 29, 88 |
Conread position: | 1-212 |
Cow position: | chr16:49236040-49235834 (view UCSC Genome Browser custom track) |
Alignm length: | 212 |
Alignm identity: | 155 |
Alignm E-value: | 5e-33 |
Alignm gaps (pig, cow): | 29, 0 |
Conread position: | 1-306 |
Cow position: | chr16:29676231-29675934 (view UCSC Genome Browser custom track) |
Alignm length: | 306 |
Alignm identity: | 238 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 29, 0 |
Conread position: | 1-470 |
Cow position: | chr16:27734730-27734263 (view UCSC Genome Browser custom track) |
Alignm length: | 470 |
Alignm identity: | 365 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 0 |
Conread position: | 1-482 |
Cow position: | chr16:836105-836580 (view UCSC Genome Browser custom track) |
Alignm length: | 482 |
Alignm identity: | 373 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 0 |
Conread position: | 1-483 |
Cow position: | chr16:2484062-2483590 (view UCSC Genome Browser custom track) |
Alignm length: | 484 |
Alignm identity: | 364 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 264, 24 |
Conread position: | 1-483 |
Cow position: | chr16:12538850-12538373 (view UCSC Genome Browser custom track) |
Alignm length: | 483 |
Alignm identity: | 369 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 0 |
Conread position: | 1-483 |
Cow position: | chr16:15183881-15184355 (view UCSC Genome Browser custom track) |
Alignm length: | 483 |
Alignm identity: | 371 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 24, 0 |
Conread position: | 1-483 |
Cow position: | chr16:23253429-23252955 (view UCSC Genome Browser custom track) |
Alignm length: | 483 |
Alignm identity: | 369 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 29, 0 |
Conread position: | 1-483 |
Cow position: | chr16:25440694-25441176 (view UCSC Genome Browser custom track) |
Alignm length: | 490 |
Alignm identity: | 368 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 264, 12 |
Conread position: | 1-483 |
Cow position: | chr16:25458395-25457913 (view UCSC Genome Browser custom track) |
Alignm length: | 490 |
Alignm identity: | 369 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 264, 12 |
Conread position: | 1-483 |
Cow position: | chr16:29046095-29046574 (view UCSC Genome Browser custom track) |
Alignm length: | 483 |
Alignm identity: | 369 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 0 |
Conread position: | 1-486 |
Cow position: | chr16:36362273-36361807 (view UCSC Genome Browser custom track) |
Alignm length: | 489 |
Alignm identity: | 372 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 311, 29 |
Conread position: | 1-496 |
Cow position: | chr16:36282473-36282963 (view UCSC Genome Browser custom track) |
Alignm length: | 502 |
Alignm identity: | 382 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 29, 86 |
Conread position: | 1-503 |
Cow position: | chr16:6549447-6548952 (view UCSC Genome Browser custom track) |
Alignm length: | 503 |
Alignm identity: | 400 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 29, 0 |
Conread position: | 1-503 |
Cow position: | chr16:10808241-10808722 (view UCSC Genome Browser custom track) |
Alignm length: | 503 |
Alignm identity: | 386 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 27, 0 |
Conread position: | 1-503 |
Cow position: | chr16:20255236-20254739 (view UCSC Genome Browser custom track) |
Alignm length: | 503 |
Alignm identity: | 396 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 29, 0 |
Conread position: | 1-503 |
Cow position: | chr16:25084697-25085193 (view UCSC Genome Browser custom track) |
Alignm length: | 503 |
Alignm identity: | 385 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 30, 0 |
Conread position: | 1-503 |
Cow position: | chr16:39820713-39821202 (view UCSC Genome Browser custom track) |
Alignm length: | 504 |
Alignm identity: | 390 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 273, 25 |
Conread position: | 1-524 |
Cow position: | chr16:8817030-8816511 (view UCSC Genome Browser custom track) |
Alignm length: | 525 |
Alignm identity: | 396 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 264, 32 |
Conread position: | 1-526 |
Cow position: | chr16:23982386-23982905 (view UCSC Genome Browser custom track) |
Alignm length: | 527 |
Alignm identity: | 402 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 224, 29 |
Conread position: | 1-526 |
Cow position: | chr16:40297101-40296583 (view UCSC Genome Browser custom track) |
Alignm length: | 526 |
Alignm identity: | 384 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 0 |
Conread position: | 1-528 |
Cow position: | chr16:25341046-25341563 (view UCSC Genome Browser custom track) |
Alignm length: | 530 |
Alignm identity: | 401 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 490, 24 |
Conread position: | 1-536 |
Cow position: | chr16:2728238-2727684 (view UCSC Genome Browser custom track) |
Alignm length: | 562 |
Alignm identity: | 406 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 136, 32 |
Conread position: | 1-618 |
Cow position: | chr16:49257493-49256896 (view UCSC Genome Browser custom track) |
Alignm length: | 620 |
Alignm identity: | 478 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 201, 27 |
Conread position: | 1-805 |
Cow position: | chr16:42740347-42739555 (view UCSC Genome Browser custom track) |
Alignm length: | 814 |
Alignm identity: | 610 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 78, 30 |
Conread position: | 1-806 |
Cow position: | chr16:25157142-25156340 (view UCSC Genome Browser custom track) |
Alignm length: | 823 |
Alignm identity: | 619 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 432, 29 |
Conread position: | 2-496 |
Cow position: | chr16:2411894-2411403 (view UCSC Genome Browser custom track) |
Alignm length: | 497 |
Alignm identity: | 379 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 208, 31 |
Conread position: | 5-209 |
Cow position: | chr16:7905721-7905924 (view UCSC Genome Browser custom track) |
Alignm length: | 206 |
Alignm identity: | 162 |
Alignm E-value: | 5.04467e-44 |
Alignm gaps (pig, cow): | 118, 23 |
Conread position: | 5-334 |
Cow position: | chr16:32605906-32606233 (view UCSC Genome Browser custom track) |
Alignm length: | 331 |
Alignm identity: | 246 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 124, 28 |
Conread position: | 5-377 |
Cow position: | chr16:4303391-4303031 (view UCSC Genome Browser custom track) |
Alignm length: | 373 |
Alignm identity: | 268 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 12, 0 |
Conread position: | 5-483 |
Cow position: | chr16:1568374-1567902 (view UCSC Genome Browser custom track) |
Alignm length: | 480 |
Alignm identity: | 369 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 260, 26 |
Conread position: | 5-485 |
Cow position: | chr16:5918563-5919037 (view UCSC Genome Browser custom track) |
Alignm length: | 481 |
Alignm identity: | 372 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 0 |
Conread position: | 5-498 |
Cow position: | chr16:56551207-56551688 (view UCSC Genome Browser custom track) |
Alignm length: | 495 |
Alignm identity: | 383 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 487, 25 |
Conread position: | 5-501 |
Cow position: | chr16:6942701-6943202 (view UCSC Genome Browser custom track) |
Alignm length: | 504 |
Alignm identity: | 384 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 342, 28 |
Conread position: | 5-504 |
Cow position: | chr16:25187720-25188217 (view UCSC Genome Browser custom track) |
Alignm length: | 503 |
Alignm identity: | 394 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 124, 28 |
Conread position: | 5-526 |
Cow position: | chr16:26662829-26663344 (view UCSC Genome Browser custom track) |
Alignm length: | 522 |
Alignm identity: | 389 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 0 |
Conread position: | 5-541 |
Cow position: | chr16:31827-32352 (view UCSC Genome Browser custom track) |
Alignm length: | 543 |
Alignm identity: | 403 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 493, 28 |
Conread position: | 7-251 |
Cow position: | chr16:24881607-24881369 (view UCSC Genome Browser custom track) |
Alignm length: | 245 |
Alignm identity: | 178 |
Alignm E-value: | 9e-39 |
Alignm gaps (pig, cow): | 26, 0 |
Conread position: | 7-526 |
Cow position: | chr16:10204333-10203835 (view UCSC Genome Browser custom track) |
Alignm length: | 520 |
Alignm identity: | 376 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 26, 0 |
Conread position: | 14-563 |
Cow position: | chr16:34529413-34529959 (view UCSC Genome Browser custom track) |
Alignm length: | 556 |
Alignm identity: | 410 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 491, 19 |
Conread position: | 17-470 |
Cow position: | chr16:10437345-10437782 (view UCSC Genome Browser custom track) |
Alignm length: | 454 |
Alignm identity: | 344 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 16, 0 |
Conread position: | 18-489 |
Cow position: | chr16:2239642-2239182 (view UCSC Genome Browser custom track) |
Alignm length: | 473 |
Alignm identity: | 348 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 209, 17 |
Conread position: | 21-497 |
Cow position: | chr16:11052261-11052726 (view UCSC Genome Browser custom track) |
Alignm length: | 478 |
Alignm identity: | 379 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 374, 61 |
Conread position: | 21-526 |
Cow position: | chr16:5483416-5483918 (view UCSC Genome Browser custom track) |
Alignm length: | 507 |
Alignm identity: | 375 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 37, 14 |
Conread position: | 23-581 |
Cow position: | chr16:335395-335935 (view UCSC Genome Browser custom track) |
Alignm length: | 561 |
Alignm identity: | 408 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 333, 20 |
Conread position: | 25-586 |
Cow position: | chr16:44388482-44387908 (view UCSC Genome Browser custom track) |
Alignm length: | 586 |
Alignm identity: | 381 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 254, 63 |
Conread position: | 28-593 |
Cow position: | chr16:9929647-9930197 (view UCSC Genome Browser custom track) |
Alignm length: | 568 |
Alignm identity: | 411 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 464, 7 |
Conread position: | 29-500 |
Cow position: | chr16:51685535-51686004 (view UCSC Genome Browser custom track) |
Alignm length: | 480 |
Alignm identity: | 338 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 11, 17 |
Conread position: | 36-579 |
Cow position: | chr16:31376147-31375633 (view UCSC Genome Browser custom track) |
Alignm length: | 548 |
Alignm identity: | 400 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 90, 52 |
Conread position: | 44-483 |
Cow position: | chr16:14666714-14666277 (view UCSC Genome Browser custom track) |
Alignm length: | 440 |
Alignm identity: | 344 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 42, 0 |
Conread position: | 52-507 |
Cow position: | chr16:29982564-29983012 (view UCSC Genome Browser custom track) |
Alignm length: | 466 |
Alignm identity: | 302 |
Alignm E-value: | 7e-36 |
Alignm gaps (pig, cow): | 50, 24 |
Conread position: | 132-593 |
Cow position: | chr16:32935362-32935832 (view UCSC Genome Browser custom track) |
Alignm length: | 478 |
Alignm identity: | 355 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 193, 93 |
Conread position: | 140-503 |
Cow position: | chr16:19713676-19713317 (view UCSC Genome Browser custom track) |
Alignm length: | 367 |
Alignm identity: | 287 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 14, 21 |
Conread position: | 165-483 |
Cow position: | chr16:9777319-9777637 (view UCSC Genome Browser custom track) |
Alignm length: | 323 |
Alignm identity: | 250 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 13, 21 |
Conread position: | 228-788 |
Cow position: | chr16:49235848-49235295 (view UCSC Genome Browser custom track) |
Alignm length: | 565 |
Alignm identity: | 423 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 162, 34 |
Conread position: | 263-561 |
Cow position: | chr16:18500014-18499722 (view UCSC Genome Browser custom track) |
Alignm length: | 300 |
Alignm identity: | 231 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 267, 32 |
Conread position: | 287-538 |
Cow position: | chr16:30047850-30048101 (view UCSC Genome Browser custom track) |
Alignm length: | 257 |
Alignm identity: | 189 |
Alignm E-value: | 4.00001e-41 |
Alignm gaps (pig, cow): | 189, 38 |
Conread position: | 293-585 |
Cow position: | chr16:52815124-52814836 (view UCSC Genome Browser custom track) |
Alignm length: | 295 |
Alignm identity: | 225 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 215, 55 |
Conread position: | 307-802 |
Cow position: | chr16:29033094-29033587 (view UCSC Genome Browser custom track) |
Alignm length: | 502 |
Alignm identity: | 379 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 128, 40 |
Conread position: | 372-632 |
Cow position: | chr16:16273393-16273134 (view UCSC Genome Browser custom track) |
Alignm length: | 262 |
Alignm identity: | 201 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 159, 67 |
Conread position: | 375-512 |
Cow position: | chr16:25153167-25153304 (view UCSC Genome Browser custom track) |
Alignm length: | 138 |
Alignm identity: | 111 |
Alignm E-value: | 1e-30 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 382-806 |
Cow position: | chr16:25257055-25257480 (view UCSC Genome Browser custom track) |
Alignm length: | 427 |
Alignm identity: | 317 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 289, 149 |
Conread position: | 405-596 |
Cow position: | chr16:5889392-5889582 (view UCSC Genome Browser custom track) |
Alignm length: | 194 |
Alignm identity: | 144 |
Alignm E-value: | 1e-30 |
Alignm gaps (pig, cow): | 26, 121 |
Conread position: | 421-606 |
Cow position: | chr16:23807458-23807645 (view UCSC Genome Browser custom track) |
Alignm length: | 192 |
Alignm identity: | 148 |
Alignm E-value: | 5e-33 |
Alignm gaps (pig, cow): | 37, 48 |
Conread position: | 453-739 |
Cow position: | chr16:42050603-42050335 (view UCSC Genome Browser custom track) |
Alignm length: | 287 |
Alignm identity: | 201 |
Alignm E-value: | 5e-33 |
Alignm gaps (pig, cow): | 49, 0 |
Conread position: | 568-716 |
Cow position: | chr16:49234836-49234687 (view UCSC Genome Browser custom track) |
Alignm length: | 150 |
Alignm identity: | 113 |
Alignm E-value: | 7e-26 |
Alignm gaps (pig, cow): | 101, 0 |
Conread position: | 591-806 |
Cow position: | chr16:18499381-18499165 (view UCSC Genome Browser custom track) |
Alignm length: | 217 |
Alignm identity: | 148 |
Alignm E-value: | 3e-27 |
Alignm gaps (pig, cow): | 83, 0 |
Conread position: | 619-808 |
Cow position: | chr16:49256768-49256572 (view UCSC Genome Browser custom track) |
Alignm length: | 197 |
Alignm identity: | 157 |
Alignm E-value: | 4.00001e-41 |
Alignm gaps (pig, cow): | 53, 0 |
Show alignments to all cow chromosomes.