Cow genome map

Conread name: Spl1-SPL01C060046

Conread position: 1-160
Cow position: chr16:56320912-56321069 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 115
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 32, 0

Conread position: 1-200
Cow position: chr16:16687944-16688141 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 146
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 29, 88

Conread position: 1-212
Cow position: chr16:49236040-49235834 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 155
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 29, 0

Conread position: 1-306
Cow position: chr16:29676231-29675934 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 1-470
Cow position: chr16:27734730-27734263 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-482
Cow position: chr16:836105-836580 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 1-483
Cow position: chr16:2484062-2483590 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 264, 24

Conread position: 1-483
Cow position: chr16:12538850-12538373 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-483
Cow position: chr16:15183881-15184355 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 1-483
Cow position: chr16:23253429-23252955 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 1-483
Cow position: chr16:25440694-25441176 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 264, 12

Conread position: 1-483
Cow position: chr16:25458395-25457913 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 264, 12

Conread position: 1-483
Cow position: chr16:29046095-29046574 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-486
Cow position: chr16:36362273-36361807 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 311, 29

Conread position: 1-496
Cow position: chr16:36282473-36282963 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 86

Conread position: 1-503
Cow position: chr16:6549447-6548952 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 1-503
Cow position: chr16:10808241-10808722 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 1-503
Cow position: chr16:20255236-20254739 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 1-503
Cow position: chr16:25084697-25085193 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 0

Conread position: 1-503
Cow position: chr16:39820713-39821202 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 25

Conread position: 1-524
Cow position: chr16:8817030-8816511 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 264, 32

Conread position: 1-526
Cow position: chr16:23982386-23982905 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 29

Conread position: 1-526
Cow position: chr16:40297101-40296583 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-528
Cow position: chr16:25341046-25341563 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 490, 24

Conread position: 1-536
Cow position: chr16:2728238-2727684 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 32

Conread position: 1-618
Cow position: chr16:49257493-49256896 (view UCSC Genome Browser custom track)
Alignm length: 620
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 27

Conread position: 1-805
Cow position: chr16:42740347-42739555 (view UCSC Genome Browser custom track)
Alignm length: 814
Alignm identity: 610
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 30

Conread position: 1-806
Cow position: chr16:25157142-25156340 (view UCSC Genome Browser custom track)
Alignm length: 823
Alignm identity: 619
Alignm E-value: 0
Alignm gaps (pig, cow): 432, 29

Conread position: 2-496
Cow position: chr16:2411894-2411403 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 31

Conread position: 5-209
Cow position: chr16:7905721-7905924 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 162
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 118, 23

Conread position: 5-334
Cow position: chr16:32605906-32606233 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 28

Conread position: 5-377
Cow position: chr16:4303391-4303031 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 0

Conread position: 5-483
Cow position: chr16:1568374-1567902 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 260, 26

Conread position: 5-485
Cow position: chr16:5918563-5919037 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 5-498
Cow position: chr16:56551207-56551688 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 487, 25

Conread position: 5-501
Cow position: chr16:6942701-6943202 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 342, 28

Conread position: 5-504
Cow position: chr16:25187720-25188217 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 28

Conread position: 5-526
Cow position: chr16:26662829-26663344 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 5-541
Cow position: chr16:31827-32352 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 493, 28

Conread position: 7-251
Cow position: chr16:24881607-24881369 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 178
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 26, 0

Conread position: 7-526
Cow position: chr16:10204333-10203835 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 14-563
Cow position: chr16:34529413-34529959 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 491, 19

Conread position: 17-470
Cow position: chr16:10437345-10437782 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 0

Conread position: 18-489
Cow position: chr16:2239642-2239182 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 17

Conread position: 21-497
Cow position: chr16:11052261-11052726 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 374, 61

Conread position: 21-526
Cow position: chr16:5483416-5483918 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 14

Conread position: 23-581
Cow position: chr16:335395-335935 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 333, 20

Conread position: 25-586
Cow position: chr16:44388482-44387908 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 254, 63

Conread position: 28-593
Cow position: chr16:9929647-9930197 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 464, 7

Conread position: 29-500
Cow position: chr16:51685535-51686004 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 17

Conread position: 36-579
Cow position: chr16:31376147-31375633 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 52

Conread position: 44-483
Cow position: chr16:14666714-14666277 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 52-507
Cow position: chr16:29982564-29983012 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 302
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 50, 24

Conread position: 132-593
Cow position: chr16:32935362-32935832 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 93

Conread position: 140-503
Cow position: chr16:19713676-19713317 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 21

Conread position: 165-483
Cow position: chr16:9777319-9777637 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 21

Conread position: 228-788
Cow position: chr16:49235848-49235295 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 34

Conread position: 263-561
Cow position: chr16:18500014-18499722 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 267, 32

Conread position: 287-538
Cow position: chr16:30047850-30048101 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 189
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 189, 38

Conread position: 293-585
Cow position: chr16:52815124-52814836 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 55

Conread position: 307-802
Cow position: chr16:29033094-29033587 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 40

Conread position: 372-632
Cow position: chr16:16273393-16273134 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 67

Conread position: 375-512
Cow position: chr16:25153167-25153304 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 111
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 382-806
Cow position: chr16:25257055-25257480 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 289, 149

Conread position: 405-596
Cow position: chr16:5889392-5889582 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 144
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 26, 121

Conread position: 421-606
Cow position: chr16:23807458-23807645 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 148
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 37, 48

Conread position: 453-739
Cow position: chr16:42050603-42050335 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 201
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 49, 0

Conread position: 568-716
Cow position: chr16:49234836-49234687 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 113
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 101, 0

Conread position: 591-806
Cow position: chr16:18499381-18499165 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 148
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 83, 0

Conread position: 619-808
Cow position: chr16:49256768-49256572 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 157
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 53, 0

Show alignments to all cow chromosomes.