Cow genome map

Conread name: Spl1-SPL01C060046

Conread position: 1-239
Cow position: chr17:2579212-2579444 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 178
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 230, 12

Conread position: 1-254
Cow position: chr17:15370728-15370974 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 183
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 30, 0

Conread position: 1-268
Cow position: chr17:28109737-28110003 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 234, 30

Conread position: 1-470
Cow position: chr17:16859905-16859451 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-483
Cow position: chr17:15850049-15850527 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 32

Conread position: 1-483
Cow position: chr17:16889776-16890254 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 344, 29

Conread position: 1-489
Cow position: chr17:11088070-11087588 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 1-490
Cow position: chr17:20183574-20183097 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 27

Conread position: 1-503
Cow position: chr17:1946627-1947119 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 30

Conread position: 1-503
Cow position: chr17:4059759-4060249 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 0

Conread position: 1-503
Cow position: chr17:18185873-18185385 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 0

Conread position: 1-503
Cow position: chr17:22429831-22429338 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 465, 29

Conread position: 1-503
Cow position: chr17:23857381-23856884 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 27

Conread position: 1-503
Cow position: chr17:27345456-27345948 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 30

Conread position: 1-503
Cow position: chr17:35591866-35592364 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 29

Conread position: 1-516
Cow position: chr17:18104029-18103522 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-523
Cow position: chr17:13857122-13856595 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 32

Conread position: 1-527
Cow position: chr17:13929319-13929842 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-537
Cow position: chr17:152816-152292 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 11

Conread position: 1-593
Cow position: chr17:4081304-4081876 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 29

Conread position: 1-743
Cow position: chr17:14325842-14325125 (view UCSC Genome Browser custom track)
Alignm length: 746
Alignm identity: 562
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 12

Conread position: 2-207
Cow position: chr17:2738030-2738232 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 150
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 31, 0

Conread position: 2-504
Cow position: chr17:1879745-1880247 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 340, 48

Conread position: 4-526
Cow position: chr17:14893815-14894326 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 5-203
Cow position: chr17:11783026-11783222 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 112
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 28, 0

Conread position: 5-378
Cow position: chr17:22160571-22160941 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 5-414
Cow position: chr17:24780703-24781109 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 5-483
Cow position: chr17:3643181-3642706 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 5-486
Cow position: chr17:2248926-2248451 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 5-489
Cow position: chr17:1383156-1382678 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 0

Conread position: 5-502
Cow position: chr17:6089506-6089012 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 5-502
Cow position: chr17:24633612-24634103 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 5-504
Cow position: chr17:20666071-20665571 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 486, 28

Conread position: 5-540
Cow position: chr17:14217369-14216835 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 479, 28

Conread position: 5-541
Cow position: chr17:8208765-8209298 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 486, 16

Conread position: 6-539
Cow position: chr17:2173533-2174062 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 81

Conread position: 6-588
Cow position: chr17:20401338-20401895 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 22

Conread position: 6-597
Cow position: chr17:6002356-6001777 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 24

Conread position: 14-503
Cow position: chr17:22131898-22132378 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 15-489
Cow position: chr17:6259510-6259980 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 21-501
Cow position: chr17:15143698-15143219 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 12

Conread position: 24-496
Cow position: chr17:20088056-20087603 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 468, 7

Conread position: 28-329
Cow position: chr17:15322501-15322786 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 0

Conread position: 28-486
Cow position: chr17:9653779-9653323 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 0

Conread position: 32-592
Cow position: chr17:4295048-4295581 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 14

Conread position: 33-500
Cow position: chr17:44853252-44852786 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 18

Conread position: 33-592
Cow position: chr17:42264201-42264738 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 248, 59

Conread position: 84-503
Cow position: chr17:18027025-18026607 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 258, 0

Conread position: 90-472
Cow position: chr17:2555861-2556241 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 250, 0

Conread position: 141-293
Cow position: chr17:1283993-1283847 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 117
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 127, 73

Conread position: 185-640
Cow position: chr17:15370879-15371335 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 166

Conread position: 208-546
Cow position: chr17:18325135-18324803 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 233
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 19, 27

Conread position: 253-500
Cow position: chr17:602523-602291 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 187
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 87, 0

Conread position: 273-586
Cow position: chr17:3709283-3708975 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 214
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 246, 34

Conread position: 282-501
Cow position: chr17:12979867-12979650 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 148
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 100, 34

Conread position: 294-503
Cow position: chr17:1283763-1283555 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 167
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 0

Conread position: 315-502
Cow position: chr17:22557583-22557771 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 148
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 13, 37

Conread position: 496-743
Cow position: chr17:36987552-36987310 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 178
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 177, 94

Conread position: 508-806
Cow position: chr17:18300585-18300281 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 206
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 28, 79

Conread position: 591-806
Cow position: chr17:20401986-20402203 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 159
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 55, 18

Show alignments to all cow chromosomes.