Cow genome map
Conread name: | Spl1-SPL01C060046 |
Conread position: | 1-239 |
Cow position: | chr17:2579212-2579444 (view UCSC Genome Browser custom track) |
Alignm length: | 240 |
Alignm identity: | 178 |
Alignm E-value: | 3e-39 |
Alignm gaps (pig, cow): | 230, 12 |
Conread position: | 1-254 |
Cow position: | chr17:15370728-15370974 (view UCSC Genome Browser custom track) |
Alignm length: | 254 |
Alignm identity: | 183 |
Alignm E-value: | 2e-38 |
Alignm gaps (pig, cow): | 30, 0 |
Conread position: | 1-268 |
Cow position: | chr17:28109737-28110003 (view UCSC Genome Browser custom track) |
Alignm length: | 271 |
Alignm identity: | 200 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 234, 30 |
Conread position: | 1-470 |
Cow position: | chr17:16859905-16859451 (view UCSC Genome Browser custom track) |
Alignm length: | 470 |
Alignm identity: | 345 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 0 |
Conread position: | 1-483 |
Cow position: | chr17:15850049-15850527 (view UCSC Genome Browser custom track) |
Alignm length: | 487 |
Alignm identity: | 366 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 136, 32 |
Conread position: | 1-483 |
Cow position: | chr17:16889776-16890254 (view UCSC Genome Browser custom track) |
Alignm length: | 487 |
Alignm identity: | 389 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 344, 29 |
Conread position: | 1-489 |
Cow position: | chr17:11088070-11087588 (view UCSC Genome Browser custom track) |
Alignm length: | 489 |
Alignm identity: | 375 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 24, 0 |
Conread position: | 1-490 |
Cow position: | chr17:20183574-20183097 (view UCSC Genome Browser custom track) |
Alignm length: | 492 |
Alignm identity: | 376 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 43, 27 |
Conread position: | 1-503 |
Cow position: | chr17:1946627-1947119 (view UCSC Genome Browser custom track) |
Alignm length: | 505 |
Alignm identity: | 376 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 43, 30 |
Conread position: | 1-503 |
Cow position: | chr17:4059759-4060249 (view UCSC Genome Browser custom track) |
Alignm length: | 503 |
Alignm identity: | 384 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 34, 0 |
Conread position: | 1-503 |
Cow position: | chr17:18185873-18185385 (view UCSC Genome Browser custom track) |
Alignm length: | 503 |
Alignm identity: | 376 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 30, 0 |
Conread position: | 1-503 |
Cow position: | chr17:22429831-22429338 (view UCSC Genome Browser custom track) |
Alignm length: | 509 |
Alignm identity: | 377 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 465, 29 |
Conread position: | 1-503 |
Cow position: | chr17:23857381-23856884 (view UCSC Genome Browser custom track) |
Alignm length: | 505 |
Alignm identity: | 397 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 211, 27 |
Conread position: | 1-503 |
Cow position: | chr17:27345456-27345948 (view UCSC Genome Browser custom track) |
Alignm length: | 504 |
Alignm identity: | 394 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 195, 30 |
Conread position: | 1-503 |
Cow position: | chr17:35591866-35592364 (view UCSC Genome Browser custom track) |
Alignm length: | 506 |
Alignm identity: | 400 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 141, 29 |
Conread position: | 1-516 |
Cow position: | chr17:18104029-18103522 (view UCSC Genome Browser custom track) |
Alignm length: | 516 |
Alignm identity: | 383 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 0 |
Conread position: | 1-523 |
Cow position: | chr17:13857122-13856595 (view UCSC Genome Browser custom track) |
Alignm length: | 530 |
Alignm identity: | 396 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 71, 32 |
Conread position: | 1-527 |
Cow position: | chr17:13929319-13929842 (view UCSC Genome Browser custom track) |
Alignm length: | 527 |
Alignm identity: | 387 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 0 |
Conread position: | 1-537 |
Cow position: | chr17:152816-152292 (view UCSC Genome Browser custom track) |
Alignm length: | 548 |
Alignm identity: | 400 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 137, 11 |
Conread position: | 1-593 |
Cow position: | chr17:4081304-4081876 (view UCSC Genome Browser custom track) |
Alignm length: | 602 |
Alignm identity: | 444 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 232, 29 |
Conread position: | 1-743 |
Cow position: | chr17:14325842-14325125 (view UCSC Genome Browser custom track) |
Alignm length: | 746 |
Alignm identity: | 562 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 283, 12 |
Conread position: | 2-207 |
Cow position: | chr17:2738030-2738232 (view UCSC Genome Browser custom track) |
Alignm length: | 206 |
Alignm identity: | 150 |
Alignm E-value: | 1e-32 |
Alignm gaps (pig, cow): | 31, 0 |
Conread position: | 2-504 |
Cow position: | chr17:1879745-1880247 (view UCSC Genome Browser custom track) |
Alignm length: | 507 |
Alignm identity: | 385 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 340, 48 |
Conread position: | 4-526 |
Cow position: | chr17:14893815-14894326 (view UCSC Genome Browser custom track) |
Alignm length: | 523 |
Alignm identity: | 377 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 29, 0 |
Conread position: | 5-203 |
Cow position: | chr17:11783026-11783222 (view UCSC Genome Browser custom track) |
Alignm length: | 199 |
Alignm identity: | 112 |
Alignm E-value: | 2e-24 |
Alignm gaps (pig, cow): | 28, 0 |
Conread position: | 5-378 |
Cow position: | chr17:22160571-22160941 (view UCSC Genome Browser custom track) |
Alignm length: | 374 |
Alignm identity: | 284 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 0 |
Conread position: | 5-414 |
Cow position: | chr17:24780703-24781109 (view UCSC Genome Browser custom track) |
Alignm length: | 410 |
Alignm identity: | 318 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 0 |
Conread position: | 5-483 |
Cow position: | chr17:3643181-3642706 (view UCSC Genome Browser custom track) |
Alignm length: | 479 |
Alignm identity: | 369 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 0 |
Conread position: | 5-486 |
Cow position: | chr17:2248926-2248451 (view UCSC Genome Browser custom track) |
Alignm length: | 482 |
Alignm identity: | 369 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 0 |
Conread position: | 5-489 |
Cow position: | chr17:1383156-1382678 (view UCSC Genome Browser custom track) |
Alignm length: | 485 |
Alignm identity: | 381 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 16, 0 |
Conread position: | 5-502 |
Cow position: | chr17:6089506-6089012 (view UCSC Genome Browser custom track) |
Alignm length: | 498 |
Alignm identity: | 386 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 0 |
Conread position: | 5-502 |
Cow position: | chr17:24633612-24634103 (view UCSC Genome Browser custom track) |
Alignm length: | 498 |
Alignm identity: | 384 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 0 |
Conread position: | 5-504 |
Cow position: | chr17:20666071-20665571 (view UCSC Genome Browser custom track) |
Alignm length: | 504 |
Alignm identity: | 390 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 486, 28 |
Conread position: | 5-540 |
Cow position: | chr17:14217369-14216835 (view UCSC Genome Browser custom track) |
Alignm length: | 538 |
Alignm identity: | 399 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 479, 28 |
Conread position: | 5-541 |
Cow position: | chr17:8208765-8209298 (view UCSC Genome Browser custom track) |
Alignm length: | 542 |
Alignm identity: | 406 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 486, 16 |
Conread position: | 6-539 |
Cow position: | chr17:2173533-2174062 (view UCSC Genome Browser custom track) |
Alignm length: | 536 |
Alignm identity: | 393 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 19, 81 |
Conread position: | 6-588 |
Cow position: | chr17:20401338-20401895 (view UCSC Genome Browser custom track) |
Alignm length: | 589 |
Alignm identity: | 407 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 22 |
Conread position: | 6-597 |
Cow position: | chr17:6002356-6001777 (view UCSC Genome Browser custom track) |
Alignm length: | 597 |
Alignm identity: | 413 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 67, 24 |
Conread position: | 14-503 |
Cow position: | chr17:22131898-22132378 (view UCSC Genome Browser custom track) |
Alignm length: | 490 |
Alignm identity: | 368 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 18, 0 |
Conread position: | 15-489 |
Cow position: | chr17:6259510-6259980 (view UCSC Genome Browser custom track) |
Alignm length: | 475 |
Alignm identity: | 358 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 18, 0 |
Conread position: | 21-501 |
Cow position: | chr17:15143698-15143219 (view UCSC Genome Browser custom track) |
Alignm length: | 483 |
Alignm identity: | 370 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 193, 12 |
Conread position: | 24-496 |
Cow position: | chr17:20088056-20087603 (view UCSC Genome Browser custom track) |
Alignm length: | 474 |
Alignm identity: | 354 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 468, 7 |
Conread position: | 28-329 |
Cow position: | chr17:15322501-15322786 (view UCSC Genome Browser custom track) |
Alignm length: | 302 |
Alignm identity: | 222 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 25, 0 |
Conread position: | 28-486 |
Cow position: | chr17:9653779-9653323 (view UCSC Genome Browser custom track) |
Alignm length: | 459 |
Alignm identity: | 360 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 59, 0 |
Conread position: | 32-592 |
Cow position: | chr17:4295048-4295581 (view UCSC Genome Browser custom track) |
Alignm length: | 563 |
Alignm identity: | 417 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 9, 14 |
Conread position: | 33-500 |
Cow position: | chr17:44853252-44852786 (view UCSC Genome Browser custom track) |
Alignm length: | 471 |
Alignm identity: | 351 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 44, 18 |
Conread position: | 33-592 |
Cow position: | chr17:42264201-42264738 (view UCSC Genome Browser custom track) |
Alignm length: | 563 |
Alignm identity: | 387 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 248, 59 |
Conread position: | 84-503 |
Cow position: | chr17:18027025-18026607 (view UCSC Genome Browser custom track) |
Alignm length: | 420 |
Alignm identity: | 324 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 258, 0 |
Conread position: | 90-472 |
Cow position: | chr17:2555861-2556241 (view UCSC Genome Browser custom track) |
Alignm length: | 383 |
Alignm identity: | 304 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 250, 0 |
Conread position: | 141-293 |
Cow position: | chr17:1283993-1283847 (view UCSC Genome Browser custom track) |
Alignm length: | 154 |
Alignm identity: | 117 |
Alignm E-value: | 1e-22 |
Alignm gaps (pig, cow): | 127, 73 |
Conread position: | 185-640 |
Cow position: | chr17:15370879-15371335 (view UCSC Genome Browser custom track) |
Alignm length: | 462 |
Alignm identity: | 340 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 63, 166 |
Conread position: | 208-546 |
Cow position: | chr17:18325135-18324803 (view UCSC Genome Browser custom track) |
Alignm length: | 343 |
Alignm identity: | 233 |
Alignm E-value: | 2e-38 |
Alignm gaps (pig, cow): | 19, 27 |
Conread position: | 253-500 |
Cow position: | chr17:602523-602291 (view UCSC Genome Browser custom track) |
Alignm length: | 248 |
Alignm identity: | 187 |
Alignm E-value: | 1.00053e-42 |
Alignm gaps (pig, cow): | 87, 0 |
Conread position: | 273-586 |
Cow position: | chr17:3709283-3708975 (view UCSC Genome Browser custom track) |
Alignm length: | 317 |
Alignm identity: | 214 |
Alignm E-value: | 6e-36 |
Alignm gaps (pig, cow): | 246, 34 |
Conread position: | 282-501 |
Cow position: | chr17:12979867-12979650 (view UCSC Genome Browser custom track) |
Alignm length: | 221 |
Alignm identity: | 148 |
Alignm E-value: | 1e-22 |
Alignm gaps (pig, cow): | 100, 34 |
Conread position: | 294-503 |
Cow position: | chr17:1283763-1283555 (view UCSC Genome Browser custom track) |
Alignm length: | 210 |
Alignm identity: | 167 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 54, 0 |
Conread position: | 315-502 |
Cow position: | chr17:22557583-22557771 (view UCSC Genome Browser custom track) |
Alignm length: | 192 |
Alignm identity: | 148 |
Alignm E-value: | 1e-34 |
Alignm gaps (pig, cow): | 13, 37 |
Conread position: | 496-743 |
Cow position: | chr17:36987552-36987310 (view UCSC Genome Browser custom track) |
Alignm length: | 249 |
Alignm identity: | 178 |
Alignm E-value: | 2e-36 |
Alignm gaps (pig, cow): | 177, 94 |
Conread position: | 508-806 |
Cow position: | chr17:18300585-18300281 (view UCSC Genome Browser custom track) |
Alignm length: | 310 |
Alignm identity: | 206 |
Alignm E-value: | 5e-25 |
Alignm gaps (pig, cow): | 28, 79 |
Conread position: | 591-806 |
Cow position: | chr17:20401986-20402203 (view UCSC Genome Browser custom track) |
Alignm length: | 221 |
Alignm identity: | 159 |
Alignm E-value: | 9e-30 |
Alignm gaps (pig, cow): | 55, 18 |
Show alignments to all cow chromosomes.