Cow genome map
| Conread name: | Spl1-SPL01C060046 |
| Conread position: | 1-163 |
| Cow position: | chr18:25349898-25350058 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-185 |
| Cow position: | chr18:32651855-32652036 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 11, 33 |
| Conread position: | 1-263 |
| Cow position: | chr18:27986888-27987146 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1-427 |
| Cow position: | chr18:54024497-54024078 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 18 |
| Conread position: | 1-483 |
| Cow position: | chr18:16176747-16176280 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 32 |
| Conread position: | 1-483 |
| Cow position: | chr18:23797510-23797985 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-483 |
| Cow position: | chr18:28974041-28973565 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1-483 |
| Cow position: | chr18:51480699-51481177 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 27 |
| Conread position: | 1-496 |
| Cow position: | chr18:33358727-33359217 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 18 |
| Conread position: | 1-496 |
| Cow position: | chr18:43147065-43146574 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 491, 29 |
| Conread position: | 1-497 |
| Cow position: | chr18:35335348-35335831 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1-503 |
| Cow position: | chr18:23944512-23944015 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 491, 29 |
| Conread position: | 1-503 |
| Cow position: | chr18:33268700-33269183 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 29 |
| Conread position: | 1-503 |
| Cow position: | chr18:47719706-47719226 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 255, 20 |
| Conread position: | 1-503 |
| Cow position: | chr18:48221736-48222236 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 29 |
| Conread position: | 1-503 |
| Cow position: | chr18:53785700-53786195 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 285, 27 |
| Conread position: | 1-504 |
| Cow position: | chr18:51310442-51310942 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 63 |
| Conread position: | 1-526 |
| Cow position: | chr18:36508192-36508713 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-526 |
| Cow position: | chr18:41840966-41840444 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-601 |
| Cow position: | chr18:2887164-2886564 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 31 |
| Conread position: | 1-806 |
| Cow position: | chr18:54171984-54171212 (view UCSC Genome Browser custom track) |
| Alignm length: | 813 |
| Alignm identity: | 583 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 492, 32 |
| Conread position: | 5-160 |
| Cow position: | chr18:37585800-37585648 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 5-208 |
| Cow position: | chr18:51660280-51660481 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 124, 28 |
| Conread position: | 5-373 |
| Cow position: | chr18:16660141-16659791 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 5-483 |
| Cow position: | chr18:14415842-14416313 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 5-489 |
| Cow position: | chr18:55089062-55088581 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 5-502 |
| Cow position: | chr18:22602350-22602844 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 5-502 |
| Cow position: | chr18:33953705-33953218 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 5-502 |
| Cow position: | chr18:51689490-51689981 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 5-503 |
| Cow position: | chr18:6869392-6868901 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 12 |
| Conread position: | 5-503 |
| Cow position: | chr18:39748445-39748935 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 23 |
| Conread position: | 5-504 |
| Cow position: | chr18:19352249-19352745 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 479, 28 |
| Conread position: | 5-541 |
| Cow position: | chr18:16078566-16079115 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 16 |
| Conread position: | 5-562 |
| Cow position: | chr18:51257846-51258398 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 25 |
| Conread position: | 5-806 |
| Cow position: | chr18:29236681-29237469 (view UCSC Genome Browser custom track) |
| Alignm length: | 806 |
| Alignm identity: | 616 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 485, 23 |
| Conread position: | 6-302 |
| Cow position: | chr18:44621623-44621917 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 27 |
| Conread position: | 7-190 |
| Cow position: | chr18:22869620-22869801 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 7-308 |
| Cow position: | chr18:17992697-17992401 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 7-503 |
| Cow position: | chr18:54044836-54044365 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 9-503 |
| Cow position: | chr18:32293642-32294116 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 262, 23 |
| Conread position: | 14-320 |
| Cow position: | chr18:35288402-35288714 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 75 |
| Conread position: | 17-504 |
| Cow position: | chr18:51341561-51342049 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 476, 16 |
| Conread position: | 18-428 |
| Cow position: | chr18:18897377-18897776 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 72 |
| Conread position: | 18-497 |
| Cow position: | chr18:2019810-2019335 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 21-563 |
| Cow position: | chr18:16533856-16534402 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 66 |
| Conread position: | 45-600 |
| Cow position: | chr18:36258452-36257903 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 19 |
| Conread position: | 72-501 |
| Cow position: | chr18:5980371-5980785 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 284 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 57, 16 |
| Conread position: | 81-483 |
| Cow position: | chr18:14130326-14130722 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 100-483 |
| Cow position: | chr18:52650887-52651257 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 167-503 |
| Cow position: | chr18:19539557-19539227 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 0 |
| Conread position: | 181-586 |
| Cow position: | chr18:54269622-54270018 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 32 |
| Conread position: | 217-581 |
| Cow position: | chr18:16843263-16842904 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 322, 66 |
| Conread position: | 292-503 |
| Cow position: | chr18:17992273-17992063 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 313-581 |
| Cow position: | chr18:29763539-29763800 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 35 |
| Conread position: | 335-702 |
| Cow position: | chr18:56462713-56462351 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 334, 156 |
Show alignments to all cow chromosomes.