Cow genome map
| Conread name: | Spl1-SPL01C060046 |
| Conread position: | 1-211 |
| Cow position: | chr19:4252494-4252288 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 162 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 1-269 |
| Cow position: | chr19:28376394-28376647 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-286 |
| Cow position: | chr19:27052900-27052623 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 1-302 |
| Cow position: | chr19:29209424-29209721 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-362 |
| Cow position: | chr19:55078609-55078967 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-378 |
| Cow position: | chr19:30372146-30372511 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 1-426 |
| Cow position: | chr19:261298-261728 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 30 |
| Conread position: | 1-432 |
| Cow position: | chr19:4385348-4385772 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 32 |
| Conread position: | 1-483 |
| Cow position: | chr19:203827-204303 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 1-483 |
| Cow position: | chr19:28581792-28581317 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 45 |
| Conread position: | 1-483 |
| Cow position: | chr19:32665396-32665867 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-483 |
| Cow position: | chr19:40852567-40852096 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-489 |
| Cow position: | chr19:170877-170399 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-496 |
| Cow position: | chr19:10672443-10671951 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-503 |
| Cow position: | chr19:416516-417022 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 29 |
| Conread position: | 1-528 |
| Cow position: | chr19:172074-172598 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 497, 32 |
| Conread position: | 1-586 |
| Cow position: | chr19:30755040-30755615 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 87 |
| Conread position: | 2-363 |
| Cow position: | chr19:543763-543404 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 75 |
| Conread position: | 2-526 |
| Cow position: | chr19:39390385-39390893 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 5-163 |
| Cow position: | chr19:52152394-52152238 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 5-266 |
| Cow position: | chr19:32193444-32193704 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 28 |
| Conread position: | 5-459 |
| Cow position: | chr19:32244547-32245002 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 85 |
| Conread position: | 5-489 |
| Cow position: | chr19:43143586-43144064 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 5-496 |
| Cow position: | chr19:28593144-28593619 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 28 |
| Conread position: | 10-586 |
| Cow position: | chr19:15953733-15954279 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 9 |
| Conread position: | 15-483 |
| Cow position: | chr19:33873304-33873768 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 18-395 |
| Cow position: | chr19:31341586-31341976 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 260, 12 |
| Conread position: | 20-489 |
| Cow position: | chr19:37778-38243 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 21-365 |
| Cow position: | chr19:34301-34640 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 66 |
| Conread position: | 21-569 |
| Cow position: | chr19:32202635-32203168 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 71 |
| Conread position: | 31-636 |
| Cow position: | chr19:32223547-32222953 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 380, 55 |
| Conread position: | 35-456 |
| Cow position: | chr19:350387-349976 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 36-347 |
| Cow position: | chr19:9117649-9117343 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 56, 46 |
| Conread position: | 83-387 |
| Cow position: | chr19:32237737-32237441 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 143-612 |
| Cow position: | chr19:35376798-35377249 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 165-808 |
| Cow position: | chr19:377871-377244 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 49 |
| Conread position: | 181-502 |
| Cow position: | chr19:1032118-1032436 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 201-806 |
| Cow position: | chr19:352932-352320 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 152 |
| Conread position: | 242-593 |
| Cow position: | chr19:42649010-42648664 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 289, 106 |
| Conread position: | 297-503 |
| Cow position: | chr19:28376641-28376848 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 51 |
| Conread position: | 298-569 |
| Cow position: | chr19:40817545-40817270 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 201 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 194, 52 |
| Conread position: | 329-503 |
| Cow position: | chr19:341411-341583 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 333-808 |
| Cow position: | chr19:42877-43350 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 231 |
| Conread position: | 356-806 |
| Cow position: | chr19:163215-162770 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 161 |
| Conread position: | 357-637 |
| Cow position: | chr19:27037735-27037456 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 169, 60 |
| Conread position: | 368-806 |
| Cow position: | chr19:27052621-27052176 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 303, 94 |
| Conread position: | 430-792 |
| Cow position: | chr19:263092-263453 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 57, 174 |
| Conread position: | 439-806 |
| Cow position: | chr19:137058-136693 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 54 |
| Conread position: | 474-798 |
| Cow position: | chr19:47610414-47610082 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 474-806 |
| Cow position: | chr19:44532445-44532789 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 255 |
| Conread position: | 567-800 |
| Cow position: | chr19:3138021-3138260 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 181 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 104, 209 |
| Conread position: | 573-799 |
| Cow position: | chr19:44224832-44224606 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 100, 59 |
Show alignments to all cow chromosomes.