Cow genome map

Conread name: Spl1-SPL01C060046

Conread position: 1-154
Cow position: chr2:24921651-24921802 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 32, 0

Conread position: 1-160
Cow position: chr2:51305598-51305445 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 120
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 25, 0

Conread position: 1-197
Cow position: chr2:8117558-8117750 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 150
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 32, 0

Conread position: 1-210
Cow position: chr2:45213950-45213743 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 159
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 32, 0

Conread position: 1-263
Cow position: chr2:25888898-25888640 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 245, 24

Conread position: 1-288
Cow position: chr2:12224843-12224556 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 171
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 29, 86

Conread position: 1-305
Cow position: chr2:41149351-41149650 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 229, 31

Conread position: 1-344
Cow position: chr2:975965-975631 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 22

Conread position: 1-373
Cow position: chr2:6877800-6878152 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 270, 87

Conread position: 1-376
Cow position: chr2:32458701-32458332 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 1-394
Cow position: chr2:26865237-26864860 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-403
Cow position: chr2:56438414-56438027 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 12

Conread position: 1-414
Cow position: chr2:24145582-24145985 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-443
Cow position: chr2:52655779-52656210 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 27

Conread position: 1-456
Cow position: chr2:202345-201908 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 29

Conread position: 1-458
Cow position: chr2:85356461-85356019 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 1-470
Cow position: chr2:283387-282921 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-483
Cow position: chr2:28650919-28650447 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 0

Conread position: 1-486
Cow position: chr2:14560503-14560967 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 30

Conread position: 1-486
Cow position: chr2:26868582-26869054 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 27

Conread position: 1-490
Cow position: chr2:52152546-52152073 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 29

Conread position: 1-496
Cow position: chr2:5814104-5813587 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 32

Conread position: 1-496
Cow position: chr2:11969456-11968971 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 29

Conread position: 1-496
Cow position: chr2:32654656-32655134 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 448, 25

Conread position: 1-496
Cow position: chr2:44346021-44346513 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 1-499
Cow position: chr2:78741440-78741933 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 33

Conread position: 1-501
Cow position: chr2:78761784-78762272 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 24

Conread position: 1-502
Cow position: chr2:52061975-52062470 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 1-503
Cow position: chr2:6772857-6772368 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 451, 29

Conread position: 1-503
Cow position: chr2:10844030-10843546 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 29

Conread position: 1-503
Cow position: chr2:72922523-72922027 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 1-504
Cow position: chr2:5905542-5905058 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-569
Cow position: chr2:7211011-7211567 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 530, 27

Conread position: 1-595
Cow position: chr2:7901589-7902174 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 12

Conread position: 1-764
Cow position: chr2:28621518-28620782 (view UCSC Genome Browser custom track)
Alignm length: 771
Alignm identity: 551
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 33

Conread position: 1-806
Cow position: chr2:16288558-16289324 (view UCSC Genome Browser custom track)
Alignm length: 812
Alignm identity: 602
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 29

Conread position: 2-483
Cow position: chr2:65939140-65938666 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 0

Conread position: 2-503
Cow position: chr2:44991973-44991492 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 5-266
Cow position: chr2:5519680-5519419 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 83

Conread position: 5-291
Cow position: chr2:40245369-40245649 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 0

Conread position: 5-343
Cow position: chr2:10733525-10733196 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 5-486
Cow position: chr2:51991221-51990743 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 5-489
Cow position: chr2:176219-175738 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 5-490
Cow position: chr2:4405038-4404557 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 5-497
Cow position: chr2:59414370-59413882 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 28

Conread position: 5-502
Cow position: chr2:2184947-2184453 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 28

Conread position: 5-502
Cow position: chr2:3325257-3324761 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 30

Conread position: 5-502
Cow position: chr2:41656398-41656887 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 26

Conread position: 5-502
Cow position: chr2:57142377-57141883 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 5-503
Cow position: chr2:2102155-2101666 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 5-503
Cow position: chr2:10712120-10711632 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 0

Conread position: 5-504
Cow position: chr2:44090609-44091110 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 456, 28

Conread position: 5-541
Cow position: chr2:9907223-9907759 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 486, 14

Conread position: 5-541
Cow position: chr2:25031166-25030630 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 486, 25

Conread position: 5-541
Cow position: chr2:26921006-26921531 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 28

Conread position: 5-541
Cow position: chr2:39420905-39421425 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 427, 16

Conread position: 5-573
Cow position: chr2:50321609-50322148 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 344, 23

Conread position: 5-806
Cow position: chr2:34565617-34564834 (view UCSC Genome Browser custom track)
Alignm length: 804
Alignm identity: 582
Alignm E-value: 0
Alignm gaps (pig, cow): 666, 25

Conread position: 6-795
Cow position: chr2:2357146-2356377 (view UCSC Genome Browser custom track)
Alignm length: 799
Alignm identity: 564
Alignm E-value: 0
Alignm gaps (pig, cow): 342, 24

Conread position: 7-502
Cow position: chr2:49471558-49472050 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 8-503
Cow position: chr2:422380-422872 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 22

Conread position: 14-407
Cow position: chr2:10730236-10729849 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 18

Conread position: 17-803
Cow position: chr2:28643797-28643045 (view UCSC Genome Browser custom track)
Alignm length: 788
Alignm identity: 570
Alignm E-value: 0
Alignm gaps (pig, cow): 654, 14

Conread position: 18-483
Cow position: chr2:47810334-47810797 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 15

Conread position: 18-499
Cow position: chr2:2380448-2380907 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 19-503
Cow position: chr2:44106768-44106305 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 19-503
Cow position: chr2:82166930-82167413 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 68

Conread position: 21-503
Cow position: chr2:46945992-46946471 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 66

Conread position: 21-736
Cow position: chr2:1673328-1672638 (view UCSC Genome Browser custom track)
Alignm length: 718
Alignm identity: 532
Alignm E-value: 0
Alignm gaps (pig, cow): 644, 9

Conread position: 23-489
Cow position: chr2:212892-212431 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 301, 64

Conread position: 28-256
Cow position: chr2:1491096-1490870 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 0

Conread position: 28-541
Cow position: chr2:47039081-47038568 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 463, 59

Conread position: 29-502
Cow position: chr2:5871002-5870551 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 57

Conread position: 29-503
Cow position: chr2:53473825-53473357 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 0

Conread position: 29-547
Cow position: chr2:16076967-16076448 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 57

Conread position: 30-526
Cow position: chr2:13046356-13045879 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 0

Conread position: 33-230
Cow position: chr2:5481305-5481109 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 149
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 53, 0

Conread position: 64-797
Cow position: chr2:15578204-15577477 (view UCSC Genome Browser custom track)
Alignm length: 748
Alignm identity: 550
Alignm E-value: 0
Alignm gaps (pig, cow): 130, 22

Conread position: 85-584
Cow position: chr2:3837593-3837114 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 422, 37

Conread position: 86-795
Cow position: chr2:39621676-39622391 (view UCSC Genome Browser custom track)
Alignm length: 731
Alignm identity: 544
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 108

Conread position: 90-697
Cow position: chr2:36054243-36053659 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 74

Conread position: 100-503
Cow position: chr2:1490575-1490172 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 110
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 118-806
Cow position: chr2:14821929-14822600 (view UCSC Genome Browser custom track)
Alignm length: 694
Alignm identity: 529
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 72

Conread position: 132-585
Cow position: chr2:74391682-74391218 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 152

Conread position: 165-483
Cow position: chr2:24921866-24922184 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 290, 188

Conread position: 192-682
Cow position: chr2:36031241-36030757 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 127

Conread position: 217-609
Cow position: chr2:51305216-51304827 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 129

Conread position: 225-497
Cow position: chr2:5481138-5480871 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 250-573
Cow position: chr2:75676353-75676041 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 228
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 174, 26

Conread position: 276-545
Cow position: chr2:28616627-28616362 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 0

Conread position: 276-593
Cow position: chr2:32389363-32389680 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 163

Conread position: 327-586
Cow position: chr2:41146874-41147133 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 179
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 27, 205

Conread position: 340-561
Cow position: chr2:85068918-85068710 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 158
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 182, 148

Conread position: 359-649
Cow position: chr2:41149652-41149941 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 79

Conread position: 388-586
Cow position: chr2:73191640-73191836 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 145
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 142, 11

Conread position: 398-558
Cow position: chr2:10733060-10732902 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 115
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 52, 0

Conread position: 426-614
Cow position: chr2:24393442-24393258 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 145
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 105, 136

Conread position: 451-587
Cow position: chr2:201703-201567 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 107
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 83, 37

Conread position: 532-797
Cow position: chr2:5485452-5485193 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 55

Conread position: 543-701
Cow position: chr2:28616197-28616040 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 118
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 128, 17

Conread position: 623-806
Cow position: chr2:782141-781957 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 129
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 50, 0

Show alignments to all cow chromosomes.