Cow genome map
Conread name: | Spl1-SPL01C060046 |
Conread position: | 1-230 |
Cow position: | chr21:1190981-1191214 (view UCSC Genome Browser custom track) |
Alignm length: | 235 |
Alignm identity: | 166 |
Alignm E-value: | 4e-33 |
Alignm gaps (pig, cow): | 80, 32 |
Conread position: | 1-305 |
Cow position: | chr21:3615231-3615534 (view UCSC Genome Browser custom track) |
Alignm length: | 306 |
Alignm identity: | 245 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 289, 29 |
Conread position: | 1-321 |
Cow position: | chr21:2716742-2716425 (view UCSC Genome Browser custom track) |
Alignm length: | 322 |
Alignm identity: | 250 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 289, 30 |
Conread position: | 1-462 |
Cow position: | chr21:47948048-47948505 (view UCSC Genome Browser custom track) |
Alignm length: | 462 |
Alignm identity: | 349 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 33, 0 |
Conread position: | 1-470 |
Cow position: | chr21:10850019-10850484 (view UCSC Genome Browser custom track) |
Alignm length: | 470 |
Alignm identity: | 358 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 0 |
Conread position: | 1-483 |
Cow position: | chr21:3778707-3779184 (view UCSC Genome Browser custom track) |
Alignm length: | 483 |
Alignm identity: | 358 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 0 |
Conread position: | 1-483 |
Cow position: | chr21:31559716-31559238 (view UCSC Genome Browser custom track) |
Alignm length: | 485 |
Alignm identity: | 377 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 57, 32 |
Conread position: | 1-489 |
Cow position: | chr21:48116047-48116525 (view UCSC Genome Browser custom track) |
Alignm length: | 490 |
Alignm identity: | 357 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 115, 34 |
Conread position: | 1-490 |
Cow position: | chr21:2789052-2788568 (view UCSC Genome Browser custom track) |
Alignm length: | 491 |
Alignm identity: | 394 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 289, 29 |
Conread position: | 1-503 |
Cow position: | chr21:2530187-2529690 (view UCSC Genome Browser custom track) |
Alignm length: | 504 |
Alignm identity: | 376 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 226, 29 |
Conread position: | 1-503 |
Cow position: | chr21:4456768-4457264 (view UCSC Genome Browser custom track) |
Alignm length: | 503 |
Alignm identity: | 393 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 50, 0 |
Conread position: | 1-503 |
Cow position: | chr21:13124056-13123568 (view UCSC Genome Browser custom track) |
Alignm length: | 503 |
Alignm identity: | 394 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 27, 0 |
Conread position: | 1-503 |
Cow position: | chr21:34292958-34293453 (view UCSC Genome Browser custom track) |
Alignm length: | 505 |
Alignm identity: | 387 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 47, 30 |
Conread position: | 1-503 |
Cow position: | chr21:35596308-35596804 (view UCSC Genome Browser custom track) |
Alignm length: | 503 |
Alignm identity: | 396 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 10, 0 |
Conread position: | 1-526 |
Cow position: | chr21:30561741-30562263 (view UCSC Genome Browser custom track) |
Alignm length: | 526 |
Alignm identity: | 398 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 0 |
Conread position: | 1-563 |
Cow position: | chr21:2416178-2416717 (view UCSC Genome Browser custom track) |
Alignm length: | 567 |
Alignm identity: | 420 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 504, 24 |
Conread position: | 2-806 |
Cow position: | chr21:2541475-2540675 (view UCSC Genome Browser custom track) |
Alignm length: | 810 |
Alignm identity: | 573 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 83, 28 |
Conread position: | 5-264 |
Cow position: | chr21:27708705-27708963 (view UCSC Genome Browser custom track) |
Alignm length: | 261 |
Alignm identity: | 194 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 204, 28 |
Conread position: | 5-329 |
Cow position: | chr21:33251335-33251657 (view UCSC Genome Browser custom track) |
Alignm length: | 325 |
Alignm identity: | 247 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 0 |
Conread position: | 5-425 |
Cow position: | chr21:4222744-4222333 (view UCSC Genome Browser custom track) |
Alignm length: | 421 |
Alignm identity: | 329 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 23, 0 |
Conread position: | 5-486 |
Cow position: | chr21:37044856-37045331 (view UCSC Genome Browser custom track) |
Alignm length: | 482 |
Alignm identity: | 375 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 0 |
Conread position: | 5-517 |
Cow position: | chr21:6699612-6699130 (view UCSC Genome Browser custom track) |
Alignm length: | 516 |
Alignm identity: | 340 |
Alignm E-value: | 9.99967e-42 |
Alignm gaps (pig, cow): | 262, 25 |
Conread position: | 5-526 |
Cow position: | chr21:145863-146383 (view UCSC Genome Browser custom track) |
Alignm length: | 526 |
Alignm identity: | 398 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 160, 8 |
Conread position: | 5-541 |
Cow position: | chr21:11505530-11506076 (view UCSC Genome Browser custom track) |
Alignm length: | 551 |
Alignm identity: | 407 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 375, 16 |
Conread position: | 5-541 |
Cow position: | chr21:39425006-39425543 (view UCSC Genome Browser custom track) |
Alignm length: | 543 |
Alignm identity: | 400 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 194, 28 |
Conread position: | 5-554 |
Cow position: | chr21:23860726-23861268 (view UCSC Genome Browser custom track) |
Alignm length: | 563 |
Alignm identity: | 398 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 201, 30 |
Conread position: | 8-560 |
Cow position: | chr21:36714578-36715124 (view UCSC Genome Browser custom track) |
Alignm length: | 556 |
Alignm identity: | 385 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 69, 22 |
Conread position: | 18-489 |
Cow position: | chr21:11453700-11453232 (view UCSC Genome Browser custom track) |
Alignm length: | 472 |
Alignm identity: | 364 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 15, 0 |
Conread position: | 18-525 |
Cow position: | chr21:4076801-4077299 (view UCSC Genome Browser custom track) |
Alignm length: | 510 |
Alignm identity: | 375 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 472, 12 |
Conread position: | 18-693 |
Cow position: | chr21:23811832-23812504 (view UCSC Genome Browser custom track) |
Alignm length: | 679 |
Alignm identity: | 524 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 616, 12 |
Conread position: | 21-196 |
Cow position: | chr21:17572880-17573053 (view UCSC Genome Browser custom track) |
Alignm length: | 176 |
Alignm identity: | 132 |
Alignm E-value: | 1e-30 |
Alignm gaps (pig, cow): | 12, 0 |
Conread position: | 21-523 |
Cow position: | chr21:7267583-7267074 (view UCSC Genome Browser custom track) |
Alignm length: | 517 |
Alignm identity: | 377 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 120, 65 |
Conread position: | 23-486 |
Cow position: | chr21:4590029-4589570 (view UCSC Genome Browser custom track) |
Alignm length: | 465 |
Alignm identity: | 362 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 191, 8 |
Conread position: | 24-564 |
Cow position: | chr21:2674665-2674111 (view UCSC Genome Browser custom track) |
Alignm length: | 564 |
Alignm identity: | 394 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 226, 9 |
Conread position: | 25-444 |
Cow position: | chr21:3426447-3426864 (view UCSC Genome Browser custom track) |
Alignm length: | 420 |
Alignm identity: | 317 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 61, 0 |
Conread position: | 28-300 |
Cow position: | chr21:26819056-26818785 (view UCSC Genome Browser custom track) |
Alignm length: | 273 |
Alignm identity: | 203 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 59, 0 |
Conread position: | 29-802 |
Cow position: | chr21:4183491-4184236 (view UCSC Genome Browser custom track) |
Alignm length: | 778 |
Alignm identity: | 567 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 40 |
Conread position: | 33-503 |
Cow position: | chr21:2883778-2883311 (view UCSC Genome Browser custom track) |
Alignm length: | 472 |
Alignm identity: | 356 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 463, 53 |
Conread position: | 34-806 |
Cow position: | chr21:9891574-9892354 (view UCSC Genome Browser custom track) |
Alignm length: | 798 |
Alignm identity: | 580 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 315, 52 |
Conread position: | 48-483 |
Cow position: | chr21:27282372-27282803 (view UCSC Genome Browser custom track) |
Alignm length: | 445 |
Alignm identity: | 321 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 179, 38 |
Conread position: | 59-522 |
Cow position: | chr21:8678364-8677903 (view UCSC Genome Browser custom track) |
Alignm length: | 464 |
Alignm identity: | 283 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 0 |
Conread position: | 59-541 |
Cow position: | chr21:6339562-6340046 (view UCSC Genome Browser custom track) |
Alignm length: | 488 |
Alignm identity: | 378 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 432, 28 |
Conread position: | 113-503 |
Cow position: | chr21:40271628-40271238 (view UCSC Genome Browser custom track) |
Alignm length: | 392 |
Alignm identity: | 295 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 370, 227 |
Conread position: | 117-503 |
Cow position: | chr21:3798314-3797933 (view UCSC Genome Browser custom track) |
Alignm length: | 387 |
Alignm identity: | 304 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 12, 0 |
Conread position: | 195-524 |
Cow position: | chr21:4086933-4087261 (view UCSC Genome Browser custom track) |
Alignm length: | 331 |
Alignm identity: | 231 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 65, 22 |
Conread position: | 251-711 |
Cow position: | chr21:30226206-30226656 (view UCSC Genome Browser custom track) |
Alignm length: | 462 |
Alignm identity: | 323 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 407, 97 |
Conread position: | 274-504 |
Cow position: | chr21:3615531-3615750 (view UCSC Genome Browser custom track) |
Alignm length: | 232 |
Alignm identity: | 185 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 9, 39 |
Conread position: | 317-802 |
Cow position: | chr21:359287-359768 (view UCSC Genome Browser custom track) |
Alignm length: | 491 |
Alignm identity: | 374 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 263, 31 |
Conread position: | 326-503 |
Cow position: | chr21:34258728-34258551 (view UCSC Genome Browser custom track) |
Alignm length: | 179 |
Alignm identity: | 142 |
Alignm E-value: | 8e-39 |
Alignm gaps (pig, cow): | 74, 24 |
Conread position: | 342-798 |
Cow position: | chr21:9870023-9870468 (view UCSC Genome Browser custom track) |
Alignm length: | 458 |
Alignm identity: | 334 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 324, 180 |
Conread position: | 358-496 |
Cow position: | chr21:2716425-2716286 (view UCSC Genome Browser custom track) |
Alignm length: | 140 |
Alignm identity: | 120 |
Alignm E-value: | 2e-37 |
Alignm gaps (pig, cow): | 134, 0 |
Conread position: | 401-797 |
Cow position: | chr21:29105-29498 (view UCSC Genome Browser custom track) |
Alignm length: | 397 |
Alignm identity: | 293 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 268, 0 |
Show alignments to all cow chromosomes.