Cow genome map
| Conread name: | Spl1-SPL01C060046 |
| Conread position: | 1-195 |
| Cow position: | chr22:118049-117857 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 65, 27 |
| Conread position: | 1-338 |
| Cow position: | chr22:1293730-1293395 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 29 |
| Conread position: | 1-452 |
| Cow position: | chr22:32485566-32485139 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 1-481 |
| Cow position: | chr22:560933-560462 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 32 |
| Conread position: | 1-483 |
| Cow position: | chr22:17328973-17328494 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-483 |
| Cow position: | chr22:31313111-31313584 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1-483 |
| Cow position: | chr22:39469751-39469278 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1-483 |
| Cow position: | chr22:44933746-44934224 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-485 |
| Cow position: | chr22:37131418-37131880 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 1-489 |
| Cow position: | chr22:21589099-21589575 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 264, 32 |
| Conread position: | 1-490 |
| Cow position: | chr22:1319162-1319649 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 29 |
| Conread position: | 1-503 |
| Cow position: | chr22:158144-157641 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 89 |
| Conread position: | 1-504 |
| Cow position: | chr22:1878558-1879063 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 32 |
| Conread position: | 1-526 |
| Cow position: | chr22:18816616-18816098 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 1-526 |
| Cow position: | chr22:19143933-19143411 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 264, 32 |
| Conread position: | 1-526 |
| Cow position: | chr22:34168098-34168619 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-526 |
| Cow position: | chr22:36861764-36861242 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-558 |
| Cow position: | chr22:15851105-15851644 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 25 |
| Conread position: | 1-574 |
| Cow position: | chr22:5933213-5932662 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 492, 32 |
| Conread position: | 1-575 |
| Cow position: | chr22:1321380-1321923 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 1-584 |
| Cow position: | chr22:7277289-7277863 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 29 |
| Conread position: | 1-606 |
| Cow position: | chr22:11030726-11031329 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 535, 50 |
| Conread position: | 1-740 |
| Cow position: | chr22:8136430-8135707 (view UCSC Genome Browser custom track) |
| Alignm length: | 746 |
| Alignm identity: | 538 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 352, 27 |
| Conread position: | 2-594 |
| Cow position: | chr22:44353180-44352604 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 509, 32 |
| Conread position: | 4-526 |
| Cow position: | chr22:5672506-5673027 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 12 |
| Conread position: | 5-266 |
| Cow position: | chr22:6985025-6985284 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 5-443 |
| Cow position: | chr22:24949600-24950035 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 5-489 |
| Cow position: | chr22:10910084-10909582 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 16 |
| Conread position: | 5-496 |
| Cow position: | chr22:16200263-16200733 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 487, 28 |
| Conread position: | 5-501 |
| Cow position: | chr22:293391-292907 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 23 |
| Conread position: | 5-502 |
| Cow position: | chr22:44369847-44369362 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 21 |
| Conread position: | 5-503 |
| Cow position: | chr22:39882405-39881911 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 5-504 |
| Cow position: | chr22:536871-537371 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 486, 28 |
| Conread position: | 5-540 |
| Cow position: | chr22:35672585-35672050 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 486, 28 |
| Conread position: | 5-574 |
| Cow position: | chr22:27310006-27309432 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 84 |
| Conread position: | 5-606 |
| Cow position: | chr22:6503900-6503309 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 23 |
| Conread position: | 6-537 |
| Cow position: | chr22:27386660-27386140 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 429, 27 |
| Conread position: | 6-806 |
| Cow position: | chr22:13917278-13918063 (view UCSC Genome Browser custom track) |
| Alignm length: | 805 |
| Alignm identity: | 609 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 19 |
| Conread position: | 7-483 |
| Cow position: | chr22:36183530-36184001 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 75 |
| Conread position: | 14-483 |
| Cow position: | chr22:15314169-15313707 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 251, 19 |
| Conread position: | 18-205 |
| Cow position: | chr22:10076968-10076787 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 185, 12 |
| Conread position: | 18-504 |
| Cow position: | chr22:44489670-44490155 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 473, 15 |
| Conread position: | 21-503 |
| Cow position: | chr22:46853128-46853607 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 12 |
| Conread position: | 21-563 |
| Cow position: | chr22:327367-326840 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 495, 11 |
| Conread position: | 22-750 |
| Cow position: | chr22:41419902-41419190 (view UCSC Genome Browser custom track) |
| Alignm length: | 735 |
| Alignm identity: | 528 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 62 |
| Conread position: | 23-505 |
| Cow position: | chr22:10546433-10546915 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 468, 10 |
| Conread position: | 23-805 |
| Cow position: | chr22:3306945-3306170 (view UCSC Genome Browser custom track) |
| Alignm length: | 798 |
| Alignm identity: | 575 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 251, 63 |
| Conread position: | 27-577 |
| Cow position: | chr22:4232776-4232250 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 345 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 75, 24 |
| Conread position: | 28-425 |
| Cow position: | chr22:36267163-36267551 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 344, 48 |
| Conread position: | 28-503 |
| Cow position: | chr22:525882-525428 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 310, 22 |
| Conread position: | 28-503 |
| Cow position: | chr22:36736555-36737024 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 373, 58 |
| Conread position: | 28-537 |
| Cow position: | chr22:32348188-32347692 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 61 |
| Conread position: | 31-806 |
| Cow position: | chr22:44609401-44610147 (view UCSC Genome Browser custom track) |
| Alignm length: | 781 |
| Alignm identity: | 580 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 362, 45 |
| Conread position: | 57-517 |
| Cow position: | chr22:44475073-44475513 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 100 |
| Conread position: | 57-700 |
| Cow position: | chr22:1270689-1270087 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 614, 29 |
| Conread position: | 66-504 |
| Cow position: | chr22:36533907-36533475 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 402, 20 |
| Conread position: | 72-503 |
| Cow position: | chr22:46547828-46547399 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 87-489 |
| Cow position: | chr22:20240991-20240591 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 0 |
| Conread position: | 89-326 |
| Cow position: | chr22:45880256-45880023 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 94, 142 |
| Conread position: | 115-552 |
| Cow position: | chr22:1048289-1048715 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 101 |
| Conread position: | 132-316 |
| Cow position: | chr22:13772873-13773053 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 132-503 |
| Cow position: | chr22:42771370-42771720 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 141-541 |
| Cow position: | chr22:6020566-6020970 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 350, 199 |
| Conread position: | 239-563 |
| Cow position: | chr22:117840-117511 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 109 |
| Conread position: | 279-806 |
| Cow position: | chr22:1283608-1283088 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 69 |
| Conread position: | 289-805 |
| Cow position: | chr22:23853383-23853898 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 59 |
| Conread position: | 341-577 |
| Cow position: | chr22:301930-301703 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 11, 29 |
| Conread position: | 398-503 |
| Cow position: | chr22:13773056-13773159 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 90 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 473-806 |
| Cow position: | chr22:35907484-35907158 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 22 |
| Conread position: | 502-766 |
| Cow position: | chr22:46547834-46548090 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 190 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 169, 179 |
| Conread position: | 564-806 |
| Cow position: | chr22:1322131-1322362 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 185 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 112, 34 |
| Conread position: | 603-806 |
| Cow position: | chr22:6503114-6502903 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 69, 174 |
| Conread position: | 603-806 |
| Cow position: | chr22:8740404-8740210 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 99, 79 |
Show alignments to all cow chromosomes.