Cow genome map
Conread name: | Spl1-SPL01C060046 |
Conread position: | 1-414 |
Cow position: | chr23:4815839-4816251 (view UCSC Genome Browser custom track) |
Alignm length: | 416 |
Alignm identity: | 315 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 251, 32 |
Conread position: | 1-461 |
Cow position: | chr23:2524429-2523974 (view UCSC Genome Browser custom track) |
Alignm length: | 461 |
Alignm identity: | 367 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 29, 0 |
Conread position: | 1-461 |
Cow position: | chr23:5875005-5874559 (view UCSC Genome Browser custom track) |
Alignm length: | 462 |
Alignm identity: | 361 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 67, 23 |
Conread position: | 1-479 |
Cow position: | chr23:28913179-28913637 (view UCSC Genome Browser custom track) |
Alignm length: | 479 |
Alignm identity: | 355 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 0 |
Conread position: | 1-483 |
Cow position: | chr23:967581-967105 (view UCSC Genome Browser custom track) |
Alignm length: | 484 |
Alignm identity: | 360 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 57, 29 |
Conread position: | 1-483 |
Cow position: | chr23:4888447-4888918 (view UCSC Genome Browser custom track) |
Alignm length: | 483 |
Alignm identity: | 362 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 0 |
Conread position: | 1-483 |
Cow position: | chr23:15525380-15525855 (view UCSC Genome Browser custom track) |
Alignm length: | 483 |
Alignm identity: | 369 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 25, 0 |
Conread position: | 1-483 |
Cow position: | chr23:22147492-22147009 (view UCSC Genome Browser custom track) |
Alignm length: | 491 |
Alignm identity: | 368 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 57, 32 |
Conread position: | 1-488 |
Cow position: | chr23:36031602-36031123 (view UCSC Genome Browser custom track) |
Alignm length: | 488 |
Alignm identity: | 379 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 24, 0 |
Conread position: | 1-503 |
Cow position: | chr23:988874-988383 (view UCSC Genome Browser custom track) |
Alignm length: | 505 |
Alignm identity: | 378 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 169, 29 |
Conread position: | 1-503 |
Cow position: | chr23:4276725-4277220 (view UCSC Genome Browser custom track) |
Alignm length: | 504 |
Alignm identity: | 396 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 312, 10 |
Conread position: | 1-526 |
Cow position: | chr23:2757346-2757882 (view UCSC Genome Browser custom track) |
Alignm length: | 540 |
Alignm identity: | 397 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 109, 32 |
Conread position: | 1-526 |
Cow position: | chr23:3881928-3881417 (view UCSC Genome Browser custom track) |
Alignm length: | 526 |
Alignm identity: | 389 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 19, 0 |
Conread position: | 1-526 |
Cow position: | chr23:4640858-4640336 (view UCSC Genome Browser custom track) |
Alignm length: | 526 |
Alignm identity: | 386 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 0 |
Conread position: | 1-526 |
Cow position: | chr23:11778252-11778776 (view UCSC Genome Browser custom track) |
Alignm length: | 544 |
Alignm identity: | 380 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 366, 32 |
Conread position: | 1-526 |
Cow position: | chr23:30636535-30636013 (view UCSC Genome Browser custom track) |
Alignm length: | 527 |
Alignm identity: | 390 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 397, 32 |
Conread position: | 1-538 |
Cow position: | chr23:27399270-27399801 (view UCSC Genome Browser custom track) |
Alignm length: | 540 |
Alignm identity: | 404 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 102, 32 |
Conread position: | 1-563 |
Cow position: | chr23:16617084-16616515 (view UCSC Genome Browser custom track) |
Alignm length: | 574 |
Alignm identity: | 429 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 46, 32 |
Conread position: | 1-568 |
Cow position: | chr23:15220131-15219563 (view UCSC Genome Browser custom track) |
Alignm length: | 579 |
Alignm identity: | 413 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 147, 32 |
Conread position: | 1-586 |
Cow position: | chr23:19332630-19332064 (view UCSC Genome Browser custom track) |
Alignm length: | 587 |
Alignm identity: | 412 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 403, 27 |
Conread position: | 2-504 |
Cow position: | chr23:7273425-7273897 (view UCSC Genome Browser custom track) |
Alignm length: | 505 |
Alignm identity: | 382 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 138, 29 |
Conread position: | 4-563 |
Cow position: | chr23:14974795-14974233 (view UCSC Genome Browser custom track) |
Alignm length: | 567 |
Alignm identity: | 410 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 86 |
Conread position: | 5-489 |
Cow position: | chr23:4359600-4360081 (view UCSC Genome Browser custom track) |
Alignm length: | 485 |
Alignm identity: | 382 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 25, 0 |
Conread position: | 5-489 |
Cow position: | chr23:20301982-20302463 (view UCSC Genome Browser custom track) |
Alignm length: | 489 |
Alignm identity: | 376 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 62, 26 |
Conread position: | 5-489 |
Cow position: | chr23:28217061-28217541 (view UCSC Genome Browser custom track) |
Alignm length: | 486 |
Alignm identity: | 381 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 252, 28 |
Conread position: | 5-502 |
Cow position: | chr23:31446585-31447079 (view UCSC Genome Browser custom track) |
Alignm length: | 498 |
Alignm identity: | 387 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 0 |
Conread position: | 5-523 |
Cow position: | chr23:5779314-5778803 (view UCSC Genome Browser custom track) |
Alignm length: | 519 |
Alignm identity: | 398 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 25, 0 |
Conread position: | 5-524 |
Cow position: | chr23:4434235-4434744 (view UCSC Genome Browser custom track) |
Alignm length: | 522 |
Alignm identity: | 389 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 486, 30 |
Conread position: | 5-541 |
Cow position: | chr23:2313467-2312932 (view UCSC Genome Browser custom track) |
Alignm length: | 543 |
Alignm identity: | 412 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 486, 28 |
Conread position: | 5-541 |
Cow position: | chr23:19950813-19950279 (view UCSC Genome Browser custom track) |
Alignm length: | 542 |
Alignm identity: | 406 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 235, 28 |
Conread position: | 6-480 |
Cow position: | chr23:20156459-20155973 (view UCSC Genome Browser custom track) |
Alignm length: | 493 |
Alignm identity: | 378 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 180, 14 |
Conread position: | 10-552 |
Cow position: | chr23:39026224-39026764 (view UCSC Genome Browser custom track) |
Alignm length: | 552 |
Alignm identity: | 337 |
Alignm E-value: | 9e-31 |
Alignm gaps (pig, cow): | 54, 13 |
Conread position: | 15-446 |
Cow position: | chr23:3013427-3013854 (view UCSC Genome Browser custom track) |
Alignm length: | 433 |
Alignm identity: | 333 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 81, 13 |
Conread position: | 18-483 |
Cow position: | chr23:19489321-19489787 (view UCSC Genome Browser custom track) |
Alignm length: | 470 |
Alignm identity: | 356 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 171, 13 |
Conread position: | 21-503 |
Cow position: | chr23:4509889-4510342 (view UCSC Genome Browser custom track) |
Alignm length: | 488 |
Alignm identity: | 344 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 391, 12 |
Conread position: | 31-500 |
Cow position: | chr23:25611833-25612284 (view UCSC Genome Browser custom track) |
Alignm length: | 474 |
Alignm identity: | 289 |
Alignm E-value: | 9e-21 |
Alignm gaps (pig, cow): | 139, 29 |
Conread position: | 39-635 |
Cow position: | chr23:38578095-38578674 (view UCSC Genome Browser custom track) |
Alignm length: | 602 |
Alignm identity: | 416 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 273, 49 |
Conread position: | 42-500 |
Cow position: | chr23:6216380-6216833 (view UCSC Genome Browser custom track) |
Alignm length: | 464 |
Alignm identity: | 317 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 18, 42 |
Conread position: | 60-503 |
Cow position: | chr23:31591983-31591537 (view UCSC Genome Browser custom track) |
Alignm length: | 452 |
Alignm identity: | 343 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 38 |
Conread position: | 63-517 |
Cow position: | chr23:25684231-25683786 (view UCSC Genome Browser custom track) |
Alignm length: | 461 |
Alignm identity: | 355 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 70, 19 |
Conread position: | 114-697 |
Cow position: | chr23:29474676-29474100 (view UCSC Genome Browser custom track) |
Alignm length: | 596 |
Alignm identity: | 442 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 379, 56 |
Conread position: | 132-609 |
Cow position: | chr23:1327565-1327102 (view UCSC Genome Browser custom track) |
Alignm length: | 481 |
Alignm identity: | 355 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 72, 138 |
Conread position: | 229-503 |
Cow position: | chr23:8980318-8980056 (view UCSC Genome Browser custom track) |
Alignm length: | 275 |
Alignm identity: | 207 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 39, 0 |
Conread position: | 287-503 |
Cow position: | chr23:2765403-2765188 (view UCSC Genome Browser custom track) |
Alignm length: | 217 |
Alignm identity: | 175 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 61, 0 |
Conread position: | 287-600 |
Cow position: | chr23:22875623-22875323 (view UCSC Genome Browser custom track) |
Alignm length: | 315 |
Alignm identity: | 240 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 244, 60 |
Conread position: | 358-585 |
Cow position: | chr23:31650790-31650567 (view UCSC Genome Browser custom track) |
Alignm length: | 233 |
Alignm identity: | 171 |
Alignm E-value: | 4e-33 |
Alignm gaps (pig, cow): | 115, 54 |
Conread position: | 400-643 |
Cow position: | chr23:1402719-1402481 (view UCSC Genome Browser custom track) |
Alignm length: | 245 |
Alignm identity: | 194 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 131, 35 |
Show alignments to all cow chromosomes.