Cow genome map
| Conread name: | Spl1-SPL01C060046 |
| Conread position: | 1-184 |
| Cow position: | chr28:5752066-5751884 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 113, 32 |
| Conread position: | 1-185 |
| Cow position: | chr28:34593654-34593832 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-211 |
| Cow position: | chr28:15681704-15681906 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 165 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 1-470 |
| Cow position: | chr28:22261340-22260874 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 1-481 |
| Cow position: | chr28:14705860-14705384 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 1-483 |
| Cow position: | chr28:13459782-13460259 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-483 |
| Cow position: | chr28:15378181-15377703 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-503 |
| Cow position: | chr28:1387580-1387091 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1-503 |
| Cow position: | chr28:2591730-2592224 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 1-503 |
| Cow position: | chr28:7001799-7002299 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 279, 32 |
| Conread position: | 1-503 |
| Cow position: | chr28:9953946-9954442 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 1-526 |
| Cow position: | chr28:32792568-32792048 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 32 |
| Conread position: | 1-558 |
| Cow position: | chr28:7901165-7901737 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 20 |
| Conread position: | 1-801 |
| Cow position: | chr28:5812521-5813286 (view UCSC Genome Browser custom track) |
| Alignm length: | 803 |
| Alignm identity: | 593 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 27 |
| Conread position: | 1-806 |
| Cow position: | chr28:21358831-21359618 (view UCSC Genome Browser custom track) |
| Alignm length: | 810 |
| Alignm identity: | 610 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 670, 20 |
| Conread position: | 2-185 |
| Cow position: | chr28:1168352-1168174 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 2-246 |
| Cow position: | chr28:17330709-17330473 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 160, 24 |
| Conread position: | 2-482 |
| Cow position: | chr28:2083416-2083884 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 4-346 |
| Cow position: | chr28:26426460-26426124 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 5-356 |
| Cow position: | chr28:15950796-15951142 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 5-470 |
| Cow position: | chr28:17667697-17667237 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 5-483 |
| Cow position: | chr28:8378382-8378858 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 307, 20 |
| Conread position: | 5-483 |
| Cow position: | chr28:17388296-17388771 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 5-503 |
| Cow position: | chr28:9155470-9154974 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 25 |
| Conread position: | 5-503 |
| Cow position: | chr28:24667396-24667888 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 26 |
| Conread position: | 5-504 |
| Cow position: | chr28:1952948-1953444 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 263, 16 |
| Conread position: | 5-541 |
| Cow position: | chr28:7822069-7822609 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 84 |
| Conread position: | 5-541 |
| Cow position: | chr28:14750363-14750898 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 486, 28 |
| Conread position: | 5-541 |
| Cow position: | chr28:24587248-24587786 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 28 |
| Conread position: | 5-606 |
| Cow position: | chr28:21325604-21326192 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 14 |
| Conread position: | 6-209 |
| Cow position: | chr28:2989866-2989672 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 7-489 |
| Cow position: | chr28:1815051-1814572 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 13-477 |
| Cow position: | chr28:1504678-1505135 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 14-480 |
| Cow position: | chr28:12410386-12409938 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 458, 19 |
| Conread position: | 14-483 |
| Cow position: | chr28:5114976-5114522 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 15-219 |
| Cow position: | chr28:15035671-15035470 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 18-538 |
| Cow position: | chr28:8721617-8721107 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 13 |
| Conread position: | 24-363 |
| Cow position: | chr28:7817055-7817373 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 236 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 69, 7 |
| Conread position: | 24-618 |
| Cow position: | chr28:10619274-10618699 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 64 |
| Conread position: | 49-806 |
| Cow position: | chr28:7790440-7789669 (view UCSC Genome Browser custom track) |
| Alignm length: | 782 |
| Alignm identity: | 562 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 311 |
| Conread position: | 64-496 |
| Cow position: | chr28:9137179-9136749 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 65 |
| Conread position: | 87-287 |
| Cow position: | chr28:22233794-22233595 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 152, 0 |
| Conread position: | 90-503 |
| Cow position: | chr28:2724993-2724581 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 401, 250 |
| Conread position: | 141-503 |
| Cow position: | chr28:4380890-4380535 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 229-719 |
| Cow position: | chr28:2989679-2989183 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 12 |
| Conread position: | 230-795 |
| Cow position: | chr28:5797470-5798029 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 263, 73 |
| Conread position: | 232-501 |
| Cow position: | chr28:18181110-18180849 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 242-502 |
| Cow position: | chr28:17324301-17324036 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 106 |
| Conread position: | 279-573 |
| Cow position: | chr28:10463066-10462770 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 297-506 |
| Cow position: | chr28:22233293-22233083 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 169 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 194, 51 |
| Conread position: | 297-806 |
| Cow position: | chr28:10071089-10071566 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 319-503 |
| Cow position: | chr28:13490277-13490462 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 153 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 173, 29 |
| Conread position: | 389-620 |
| Cow position: | chr28:11357518-11357290 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 176 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 142, 161 |
| Conread position: | 413-537 |
| Cow position: | chr28:2886525-2886648 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 95 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 434-806 |
| Cow position: | chr28:7817379-7817748 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 134 |
| Conread position: | 448-806 |
| Cow position: | chr28:5764501-5764841 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 104 |
| Conread position: | 506-806 |
| Cow position: | chr28:28117808-28118111 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 218 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 165, 40 |
| Conread position: | 591-806 |
| Cow position: | chr28:11356989-11356772 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 662-806 |
| Cow position: | chr28:24704369-24704514 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 11, 0 |
Show alignments to all cow chromosomes.