Cow genome map
Conread name: | Spl1-SPL01C060046 |
Conread position: | 1-197 |
Cow position: | chr29:17662698-17662894 (view UCSC Genome Browser custom track) |
Alignm length: | 198 |
Alignm identity: | 149 |
Alignm E-value: | 2e-36 |
Alignm gaps (pig, cow): | 29, 86 |
Conread position: | 1-323 |
Cow position: | chr29:21427278-21426962 (view UCSC Genome Browser custom track) |
Alignm length: | 323 |
Alignm identity: | 242 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 29, 0 |
Conread position: | 1-329 |
Cow position: | chr29:21246345-21246672 (view UCSC Genome Browser custom track) |
Alignm length: | 330 |
Alignm identity: | 249 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 46, 32 |
Conread position: | 1-477 |
Cow position: | chr29:38226770-38227229 (view UCSC Genome Browser custom track) |
Alignm length: | 485 |
Alignm identity: | 361 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 43, 32 |
Conread position: | 1-482 |
Cow position: | chr29:7431439-7430965 (view UCSC Genome Browser custom track) |
Alignm length: | 482 |
Alignm identity: | 367 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 0 |
Conread position: | 1-482 |
Cow position: | chr29:45459496-45459970 (view UCSC Genome Browser custom track) |
Alignm length: | 485 |
Alignm identity: | 365 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 423, 24 |
Conread position: | 1-483 |
Cow position: | chr29:10824182-10823714 (view UCSC Genome Browser custom track) |
Alignm length: | 485 |
Alignm identity: | 363 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 34, 88 |
Conread position: | 1-483 |
Cow position: | chr29:19623467-19622992 (view UCSC Genome Browser custom track) |
Alignm length: | 483 |
Alignm identity: | 375 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 24, 0 |
Conread position: | 1-483 |
Cow position: | chr29:19652885-19653363 (view UCSC Genome Browser custom track) |
Alignm length: | 486 |
Alignm identity: | 379 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 254, 32 |
Conread position: | 1-483 |
Cow position: | chr29:25932767-25932289 (view UCSC Genome Browser custom track) |
Alignm length: | 484 |
Alignm identity: | 371 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 264, 32 |
Conread position: | 1-483 |
Cow position: | chr29:43322336-43322810 (view UCSC Genome Browser custom track) |
Alignm length: | 483 |
Alignm identity: | 374 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 0 |
Conread position: | 1-489 |
Cow position: | chr29:40503202-40502721 (view UCSC Genome Browser custom track) |
Alignm length: | 490 |
Alignm identity: | 362 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 266, 32 |
Conread position: | 1-496 |
Cow position: | chr29:16769909-16770392 (view UCSC Genome Browser custom track) |
Alignm length: | 497 |
Alignm identity: | 380 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 491, 30 |
Conread position: | 1-503 |
Cow position: | chr29:2841588-2841098 (view UCSC Genome Browser custom track) |
Alignm length: | 504 |
Alignm identity: | 380 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 212, 20 |
Conread position: | 1-503 |
Cow position: | chr29:11049061-11049553 (view UCSC Genome Browser custom track) |
Alignm length: | 503 |
Alignm identity: | 391 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 27, 0 |
Conread position: | 1-503 |
Cow position: | chr29:27040983-27040497 (view UCSC Genome Browser custom track) |
Alignm length: | 505 |
Alignm identity: | 386 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 215, 27 |
Conread position: | 1-523 |
Cow position: | chr29:32539587-32540105 (view UCSC Genome Browser custom track) |
Alignm length: | 524 |
Alignm identity: | 393 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 264, 32 |
Conread position: | 1-526 |
Cow position: | chr29:2689682-2690198 (view UCSC Genome Browser custom track) |
Alignm length: | 527 |
Alignm identity: | 387 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 93, 27 |
Conread position: | 1-526 |
Cow position: | chr29:10648468-10647953 (view UCSC Genome Browser custom track) |
Alignm length: | 526 |
Alignm identity: | 384 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 24, 0 |
Conread position: | 1-526 |
Cow position: | chr29:20250936-20251457 (view UCSC Genome Browser custom track) |
Alignm length: | 526 |
Alignm identity: | 383 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 32, 0 |
Conread position: | 1-586 |
Cow position: | chr29:1715028-1715599 (view UCSC Genome Browser custom track) |
Alignm length: | 589 |
Alignm identity: | 408 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 173, 22 |
Conread position: | 2-503 |
Cow position: | chr29:35196455-35196939 (view UCSC Genome Browser custom track) |
Alignm length: | 502 |
Alignm identity: | 387 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 26, 0 |
Conread position: | 5-161 |
Cow position: | chr29:13578198-13578353 (view UCSC Genome Browser custom track) |
Alignm length: | 158 |
Alignm identity: | 116 |
Alignm E-value: | 4e-23 |
Alignm gaps (pig, cow): | 60, 28 |
Conread position: | 5-315 |
Cow position: | chr29:31180904-31181212 (view UCSC Genome Browser custom track) |
Alignm length: | 311 |
Alignm identity: | 232 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 0 |
Conread position: | 5-350 |
Cow position: | chr29:28060885-28060541 (view UCSC Genome Browser custom track) |
Alignm length: | 347 |
Alignm identity: | 265 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 156, 28 |
Conread position: | 5-428 |
Cow position: | chr29:32315821-32316241 (view UCSC Genome Browser custom track) |
Alignm length: | 424 |
Alignm identity: | 313 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 0 |
Conread position: | 5-483 |
Cow position: | chr29:39079925-39079457 (view UCSC Genome Browser custom track) |
Alignm length: | 479 |
Alignm identity: | 365 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 0 |
Conread position: | 5-486 |
Cow position: | chr29:15895067-15894592 (view UCSC Genome Browser custom track) |
Alignm length: | 482 |
Alignm identity: | 370 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 16, 0 |
Conread position: | 5-489 |
Cow position: | chr29:7840577-7841057 (view UCSC Genome Browser custom track) |
Alignm length: | 485 |
Alignm identity: | 368 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 0 |
Conread position: | 5-502 |
Cow position: | chr29:27250554-27250068 (view UCSC Genome Browser custom track) |
Alignm length: | 498 |
Alignm identity: | 379 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 0 |
Conread position: | 5-504 |
Cow position: | chr29:610830-610332 (view UCSC Genome Browser custom track) |
Alignm length: | 504 |
Alignm identity: | 380 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 486, 26 |
Conread position: | 5-526 |
Cow position: | chr29:2099625-2100143 (view UCSC Genome Browser custom track) |
Alignm length: | 522 |
Alignm identity: | 389 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 30, 0 |
Conread position: | 5-526 |
Cow position: | chr29:6266713-6266203 (view UCSC Genome Browser custom track) |
Alignm length: | 522 |
Alignm identity: | 388 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 39, 0 |
Conread position: | 7-205 |
Cow position: | chr29:31121588-31121784 (view UCSC Genome Browser custom track) |
Alignm length: | 199 |
Alignm identity: | 150 |
Alignm E-value: | 6e-37 |
Alignm gaps (pig, cow): | 26, 0 |
Conread position: | 7-482 |
Cow position: | chr29:5957386-5957858 (view UCSC Genome Browser custom track) |
Alignm length: | 477 |
Alignm identity: | 356 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 248, 24 |
Conread position: | 8-476 |
Cow position: | chr29:10848327-10847844 (view UCSC Genome Browser custom track) |
Alignm length: | 487 |
Alignm identity: | 374 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 102, 23 |
Conread position: | 8-503 |
Cow position: | chr29:21543582-21543094 (view UCSC Genome Browser custom track) |
Alignm length: | 496 |
Alignm identity: | 379 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 0 |
Conread position: | 10-581 |
Cow position: | chr29:104361-104913 (view UCSC Genome Browser custom track) |
Alignm length: | 573 |
Alignm identity: | 433 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 520, 18 |
Conread position: | 18-489 |
Cow position: | chr29:35296668-35297135 (view UCSC Genome Browser custom track) |
Alignm length: | 473 |
Alignm identity: | 368 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 281, 15 |
Conread position: | 25-503 |
Cow position: | chr29:43366196-43365727 (view UCSC Genome Browser custom track) |
Alignm length: | 486 |
Alignm identity: | 355 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 261, 7 |
Conread position: | 28-515 |
Cow position: | chr29:2750591-2750134 (view UCSC Genome Browser custom track) |
Alignm length: | 490 |
Alignm identity: | 361 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 16, 60 |
Conread position: | 40-505 |
Cow position: | chr29:19884883-19885351 (view UCSC Genome Browser custom track) |
Alignm length: | 472 |
Alignm identity: | 365 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 5, 48 |
Conread position: | 58-489 |
Cow position: | chr29:27981085-27980658 (view UCSC Genome Browser custom track) |
Alignm length: | 432 |
Alignm identity: | 336 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 30, 0 |
Conread position: | 74-249 |
Cow position: | chr29:43791030-43791202 (view UCSC Genome Browser custom track) |
Alignm length: | 176 |
Alignm identity: | 134 |
Alignm E-value: | 1e-31 |
Alignm gaps (pig, cow): | 5, 0 |
Conread position: | 84-526 |
Cow position: | chr29:14585785-14586220 (view UCSC Genome Browser custom track) |
Alignm length: | 443 |
Alignm identity: | 327 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 195, 0 |
Conread position: | 110-573 |
Cow position: | chr29:803468-803007 (view UCSC Genome Browser custom track) |
Alignm length: | 475 |
Alignm identity: | 332 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 19, 45 |
Conread position: | 132-489 |
Cow position: | chr29:18857039-18856683 (view UCSC Genome Browser custom track) |
Alignm length: | 358 |
Alignm identity: | 285 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 208, 0 |
Conread position: | 141-470 |
Cow position: | chr29:42650199-42650528 (view UCSC Genome Browser custom track) |
Alignm length: | 332 |
Alignm identity: | 252 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 292, 172 |
Conread position: | 312-586 |
Cow position: | chr29:24709163-24708892 (view UCSC Genome Browser custom track) |
Alignm length: | 278 |
Alignm identity: | 203 |
Alignm E-value: | 9.94922e-44 |
Alignm gaps (pig, cow): | 104, 36 |
Conread position: | 319-503 |
Cow position: | chr29:21426932-21426755 (view UCSC Genome Browser custom track) |
Alignm length: | 185 |
Alignm identity: | 151 |
Alignm E-value: | 3.00004e-41 |
Alignm gaps (pig, cow): | 29, 0 |
Conread position: | 363-806 |
Cow position: | chr29:14086313-14085880 (view UCSC Genome Browser custom track) |
Alignm length: | 448 |
Alignm identity: | 329 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 161, 42 |
Conread position: | 368-701 |
Cow position: | chr29:5983069-5982737 (view UCSC Genome Browser custom track) |
Alignm length: | 338 |
Alignm identity: | 249 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 250 |
Conread position: | 424-628 |
Cow position: | chr29:8331136-8330939 (view UCSC Genome Browser custom track) |
Alignm length: | 205 |
Alignm identity: | 150 |
Alignm E-value: | 3e-31 |
Alignm gaps (pig, cow): | 87, 0 |
Conread position: | 426-586 |
Cow position: | chr29:13648882-13649038 (view UCSC Genome Browser custom track) |
Alignm length: | 162 |
Alignm identity: | 117 |
Alignm E-value: | 3e-21 |
Alignm gaps (pig, cow): | 96, 74 |
Conread position: | 513-667 |
Cow position: | chr29:2749931-2749782 (view UCSC Genome Browser custom track) |
Alignm length: | 156 |
Alignm identity: | 118 |
Alignm E-value: | 4e-23 |
Alignm gaps (pig, cow): | 21, 103 |
Show alignments to all cow chromosomes.