Cow genome map
| Conread name: | Spl1-SPL01C060046 |
| Conread position: | 1-197 |
| Cow position: | chr4:12608005-12607812 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 46, 27 |
| Conread position: | 1-205 |
| Cow position: | chr4:10408280-10408482 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 158 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-259 |
| Cow position: | chr4:51044381-51044143 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-483 |
| Cow position: | chr4:6490847-6490387 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-483 |
| Cow position: | chr4:17926755-17926277 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 32 |
| Conread position: | 1-483 |
| Cow position: | chr4:24445700-24445229 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-483 |
| Cow position: | chr4:43880608-43881086 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-483 |
| Cow position: | chr4:44724582-44725061 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-489 |
| Cow position: | chr4:47718110-47717623 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 86 |
| Conread position: | 1-500 |
| Cow position: | chr4:40824744-40824258 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-525 |
| Cow position: | chr4:66179487-66178968 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1-526 |
| Cow position: | chr4:12241720-12241197 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 287, 32 |
| Conread position: | 1-526 |
| Cow position: | chr4:36895873-36896388 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-526 |
| Cow position: | chr4:43320137-43319626 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-526 |
| Cow position: | chr4:45049796-45049278 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 1-532 |
| Cow position: | chr4:13492075-13492597 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 527, 32 |
| Conread position: | 1-586 |
| Cow position: | chr4:11393837-11393264 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 29 |
| Conread position: | 1-674 |
| Cow position: | chr4:66925503-66926163 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 29 |
| Conread position: | 1-701 |
| Cow position: | chr4:21338487-21337815 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 535 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 30 |
| Conread position: | 1-802 |
| Cow position: | chr4:46663703-46664474 (view UCSC Genome Browser custom track) |
| Alignm length: | 805 |
| Alignm identity: | 603 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 283, 27 |
| Conread position: | 1-806 |
| Cow position: | chr4:28830539-28831319 (view UCSC Genome Browser custom track) |
| Alignm length: | 809 |
| Alignm identity: | 597 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 317, 30 |
| Conread position: | 5-204 |
| Cow position: | chr4:23114673-23114476 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 5-443 |
| Cow position: | chr4:4905657-4906084 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 5-472 |
| Cow position: | chr4:528496-528960 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 5-483 |
| Cow position: | chr4:355417-355887 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 5-483 |
| Cow position: | chr4:3961098-3961569 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 5-483 |
| Cow position: | chr4:41330943-41331416 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 28 |
| Conread position: | 5-502 |
| Cow position: | chr4:13547531-13548026 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 28 |
| Conread position: | 5-504 |
| Cow position: | chr4:1931117-1930621 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 486, 28 |
| Conread position: | 5-504 |
| Cow position: | chr4:30307950-30307456 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 16 |
| Conread position: | 5-539 |
| Cow position: | chr4:6269125-6268594 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 482, 28 |
| Conread position: | 5-541 |
| Cow position: | chr4:3125284-3125835 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 324, 28 |
| Conread position: | 6-489 |
| Cow position: | chr4:47764666-47764187 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 7-541 |
| Cow position: | chr4:158021-158555 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 486, 26 |
| Conread position: | 8-569 |
| Cow position: | chr4:15193544-15194117 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 20 |
| Conread position: | 13-585 |
| Cow position: | chr4:8598627-8598078 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 523, 18 |
| Conread position: | 14-503 |
| Cow position: | chr4:11618371-11618848 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 73 |
| Conread position: | 14-523 |
| Cow position: | chr4:57979143-57979645 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 15-489 |
| Cow position: | chr4:33073584-33073126 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 17-325 |
| Cow position: | chr4:31668830-31669129 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 18-496 |
| Cow position: | chr4:16056120-16056593 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 475, 15 |
| Conread position: | 18-502 |
| Cow position: | chr4:602510-602990 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 21-806 |
| Cow position: | chr4:1464407-1463633 (view UCSC Genome Browser custom track) |
| Alignm length: | 800 |
| Alignm identity: | 563 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 7 |
| Conread position: | 23-182 |
| Cow position: | chr4:54190376-54190533 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 116 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 23-693 |
| Cow position: | chr4:34185343-34184718 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 64 |
| Conread position: | 28-489 |
| Cow position: | chr4:5879696-5880149 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 28-489 |
| Cow position: | chr4:27332969-27333419 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 5 |
| Conread position: | 30-509 |
| Cow position: | chr4:22471716-22472172 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 309 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 141, 53 |
| Conread position: | 59-571 |
| Cow position: | chr4:17530862-17530366 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 84-701 |
| Cow position: | chr4:60264980-60264371 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 484 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 588, 16 |
| Conread position: | 92-483 |
| Cow position: | chr4:41119600-41119991 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 187 |
| Conread position: | 176-503 |
| Cow position: | chr4:61256568-61256889 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 0 |
| Conread position: | 216-526 |
| Cow position: | chr4:26749175-26748879 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 219 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 53, 113 |
| Conread position: | 273-572 |
| Cow position: | chr4:11384728-11385022 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 257, 75 |
| Conread position: | 312-503 |
| Cow position: | chr4:10408485-10408671 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 96, 36 |
| Conread position: | 474-701 |
| Cow position: | chr4:54955717-54955940 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 56, 132 |
Show alignments to all cow chromosomes.