Cow genome map
| Conread name: | Spl1-SPL01C060046 |
| Conread position: | 1-243 |
| Cow position: | chr5:4384823-4385060 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-387 |
| Cow position: | chr5:25207145-25206764 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 24 |
| Conread position: | 1-470 |
| Cow position: | chr5:10918391-10918857 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-477 |
| Cow position: | chr5:30578916-30579388 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1-481 |
| Cow position: | chr5:37731939-37732416 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-483 |
| Cow position: | chr5:2430539-2430060 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-483 |
| Cow position: | chr5:4068584-4069060 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-483 |
| Cow position: | chr5:49518260-49518730 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1-499 |
| Cow position: | chr5:32674142-32673652 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 340, 27 |
| Conread position: | 1-503 |
| Cow position: | chr5:27652397-27651890 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 97 |
| Conread position: | 1-503 |
| Cow position: | chr5:29008953-29009445 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 415, 29 |
| Conread position: | 1-503 |
| Cow position: | chr5:39165203-39164708 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 1-503 |
| Cow position: | chr5:41551331-41550834 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 432, 29 |
| Conread position: | 1-526 |
| Cow position: | chr5:24098242-24098764 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-526 |
| Cow position: | chr5:64782423-64781903 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-528 |
| Cow position: | chr5:55627598-55628103 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 24 |
| Conread position: | 1-532 |
| Cow position: | chr5:46738991-46738466 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 527, 32 |
| Conread position: | 1-536 |
| Cow position: | chr5:32733651-32733123 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 491, 29 |
| Conread position: | 1-587 |
| Cow position: | chr5:46630831-46630273 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 1-702 |
| Cow position: | chr5:49593865-49593163 (view UCSC Genome Browser custom track) |
| Alignm length: | 706 |
| Alignm identity: | 538 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 90 |
| Conread position: | 1-759 |
| Cow position: | chr5:46659318-46660063 (view UCSC Genome Browser custom track) |
| Alignm length: | 774 |
| Alignm identity: | 548 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 18 |
| Conread position: | 2-468 |
| Cow position: | chr5:31102002-31101554 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 29 |
| Conread position: | 3-282 |
| Cow position: | chr5:27569746-27570027 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 27 |
| Conread position: | 4-503 |
| Cow position: | chr5:34202543-34203027 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 26 |
| Conread position: | 5-180 |
| Cow position: | chr5:35299661-35299834 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 5-326 |
| Cow position: | chr5:46005786-46005460 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 29 |
| Conread position: | 5-332 |
| Cow position: | chr5:53714854-53715176 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 5-363 |
| Cow position: | chr5:18665559-18665914 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 5-483 |
| Cow position: | chr5:416122-415650 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 5-483 |
| Cow position: | chr5:48809115-48808643 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 5-489 |
| Cow position: | chr5:2530868-2531349 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 5-489 |
| Cow position: | chr5:14379760-14380240 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 5-489 |
| Cow position: | chr5:29042109-29042589 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 5-502 |
| Cow position: | chr5:24576511-24577006 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 28 |
| Conread position: | 5-502 |
| Cow position: | chr5:44459080-44459574 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 5-502 |
| Cow position: | chr5:48468679-48468188 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 5-502 |
| Cow position: | chr5:59481852-59482344 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 5-503 |
| Cow position: | chr5:45699878-45700358 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 74 |
| Conread position: | 5-503 |
| Cow position: | chr5:49181879-49182361 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 23 |
| Conread position: | 5-504 |
| Cow position: | chr5:4019601-4019101 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 486, 28 |
| Conread position: | 5-504 |
| Cow position: | chr5:26079621-26079124 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 486, 28 |
| Conread position: | 5-504 |
| Cow position: | chr5:31706172-31706671 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 28 |
| Conread position: | 5-504 |
| Cow position: | chr5:32772079-32772579 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 486, 28 |
| Conread position: | 5-523 |
| Cow position: | chr5:32945478-32945988 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 487, 26 |
| Conread position: | 5-526 |
| Cow position: | chr5:57482949-57482431 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 5-541 |
| Cow position: | chr5:47831507-47830979 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 486, 28 |
| Conread position: | 5-581 |
| Cow position: | chr5:23227858-23228396 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 384 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 219, 23 |
| Conread position: | 6-303 |
| Cow position: | chr5:10844276-10843981 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 6-481 |
| Cow position: | chr5:7273464-7273898 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 6-496 |
| Cow position: | chr5:26769409-26769890 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 487, 24 |
| Conread position: | 9-503 |
| Cow position: | chr5:9686812-9686335 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 21 |
| Conread position: | 14-248 |
| Cow position: | chr5:18653614-18653844 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 14-583 |
| Cow position: | chr5:51162523-51163075 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 508, 16 |
| Conread position: | 18-497 |
| Cow position: | chr5:27909660-27909186 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 18-541 |
| Cow position: | chr5:59060232-59060752 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 473, 15 |
| Conread position: | 21-500 |
| Cow position: | chr5:28022774-28023242 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 32 |
| Conread position: | 21-541 |
| Cow position: | chr5:6589408-6588886 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 386, 12 |
| Conread position: | 23-573 |
| Cow position: | chr5:41529957-41529428 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 476, 64 |
| Conread position: | 28-504 |
| Cow position: | chr5:45182489-45182006 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 13 |
| Conread position: | 31-502 |
| Cow position: | chr5:46644323-46644780 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 460, 56 |
| Conread position: | 31-526 |
| Cow position: | chr5:41962612-41962123 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 33-395 |
| Cow position: | chr5:4088427-4088789 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 56 |
| Conread position: | 48-460 |
| Cow position: | chr5:61273540-61273138 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 64-573 |
| Cow position: | chr5:26069058-26068566 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 454, 24 |
| Conread position: | 82-419 |
| Cow position: | chr5:58819962-58819626 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 258, 0 |
| Conread position: | 103-409 |
| Cow position: | chr5:5318063-5317759 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 118-585 |
| Cow position: | chr5:52433682-52434141 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 86 |
| Conread position: | 160-503 |
| Cow position: | chr5:20972282-20971954 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 0 |
| Conread position: | 191-485 |
| Cow position: | chr5:57977037-57977332 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 160 |
| Conread position: | 195-593 |
| Cow position: | chr5:39247597-39247228 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 337, 112 |
| Conread position: | 225-585 |
| Cow position: | chr5:27489063-27489422 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 305, 46 |
| Conread position: | 246-577 |
| Cow position: | chr5:51771462-51771127 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 227 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 88, 300 |
| Conread position: | 273-503 |
| Cow position: | chr5:4385120-4385338 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 297-496 |
| Cow position: | chr5:27570000-27570197 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 162 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 327-612 |
| Cow position: | chr5:18117659-18117383 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 357-593 |
| Cow position: | chr5:27059178-27058939 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 157 |
| Conread position: | 357-593 |
| Cow position: | chr5:27060081-27059842 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 157 |
| Conread position: | 372-503 |
| Cow position: | chr5:6611972-6612103 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 372-775 |
| Cow position: | chr5:40053420-40053803 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 299, 62 |
| Conread position: | 388-573 |
| Cow position: | chr5:7502933-7502748 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 16, 23 |
| Conread position: | 474-806 |
| Cow position: | chr5:61272799-61272488 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 234 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 25, 36 |
| Conread position: | 534-806 |
| Cow position: | chr5:41962151-41961871 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 52, 9 |
| Conread position: | 621-805 |
| Cow position: | chr5:41528879-41528694 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 51, 74 |
Show alignments to all cow chromosomes.