Cow genome map
| Conread name: | Spl1-SPL01C060046 |
| Conread position: | 1-203 |
| Cow position: | chr6:6476719-6476519 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 156 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 1-203 |
| Cow position: | chr6:21686631-21686823 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1-210 |
| Cow position: | chr6:47043696-47043489 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-226 |
| Cow position: | chr6:65909162-65909382 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-232 |
| Cow position: | chr6:42359946-42359716 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 29, 88 |
| Conread position: | 1-255 |
| Cow position: | chr6:1823511-1823264 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 189 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1-274 |
| Cow position: | chr6:39437379-39437647 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1-321 |
| Cow position: | chr6:50497723-50497405 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-340 |
| Cow position: | chr6:68362580-68362250 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1-427 |
| Cow position: | chr6:42927122-42927540 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 1-470 |
| Cow position: | chr6:5951501-5951045 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-477 |
| Cow position: | chr6:27530263-27529799 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1-478 |
| Cow position: | chr6:3278215-3277741 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-483 |
| Cow position: | chr6:15141439-15140966 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 311, 24 |
| Conread position: | 1-483 |
| Cow position: | chr6:15280807-15280338 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 1-483 |
| Cow position: | chr6:17045800-17046269 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 24 |
| Conread position: | 1-483 |
| Cow position: | chr6:30275447-30274965 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 88 |
| Conread position: | 1-483 |
| Cow position: | chr6:35876981-35876504 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-483 |
| Cow position: | chr6:55544591-55544113 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-489 |
| Cow position: | chr6:58409174-58408692 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 1-503 |
| Cow position: | chr6:19453664-19454149 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 23 |
| Conread position: | 1-503 |
| Cow position: | chr6:27468994-27469481 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1-503 |
| Cow position: | chr6:36525778-36526280 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 254, 32 |
| Conread position: | 1-524 |
| Cow position: | chr6:13317748-13317244 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 511, 24 |
| Conread position: | 1-526 |
| Cow position: | chr6:8761565-8761048 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-526 |
| Cow position: | chr6:34893274-34892749 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 343, 32 |
| Conread position: | 1-532 |
| Cow position: | chr6:65841330-65841842 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1-541 |
| Cow position: | chr6:2374442-2374977 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 490, 32 |
| Conread position: | 1-750 |
| Cow position: | chr6:37115873-37116603 (view UCSC Genome Browser custom track) |
| Alignm length: | 753 |
| Alignm identity: | 571 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 24 |
| Conread position: | 1-799 |
| Cow position: | chr6:38232011-38232814 (view UCSC Genome Browser custom track) |
| Alignm length: | 815 |
| Alignm identity: | 611 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 29 |
| Conread position: | 2-483 |
| Cow position: | chr6:6566349-6566819 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 2-537 |
| Cow position: | chr6:3889743-3889218 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 470, 31 |
| Conread position: | 5-182 |
| Cow position: | chr6:39907889-39908064 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 5-190 |
| Cow position: | chr6:45672004-45672187 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 5-251 |
| Cow position: | chr6:40274998-40275242 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 5-425 |
| Cow position: | chr6:57870264-57869847 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 28 |
| Conread position: | 5-443 |
| Cow position: | chr6:21971413-21971860 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 250, 28 |
| Conread position: | 5-483 |
| Cow position: | chr6:913371-913867 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 20 |
| Conread position: | 5-489 |
| Cow position: | chr6:2554447-2554926 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 5-489 |
| Cow position: | chr6:34127091-34127573 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 28 |
| Conread position: | 5-496 |
| Cow position: | chr6:26671121-26670630 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 315, 16 |
| Conread position: | 5-496 |
| Cow position: | chr6:65822387-65821898 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 488, 28 |
| Conread position: | 5-503 |
| Cow position: | chr6:65927679-65928170 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 5-504 |
| Cow position: | chr6:43617456-43617954 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 486, 28 |
| Conread position: | 5-528 |
| Cow position: | chr6:1405497-1404973 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 486, 28 |
| Conread position: | 5-541 |
| Cow position: | chr6:7141732-7141211 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 486, 28 |
| Conread position: | 5-541 |
| Cow position: | chr6:44150818-44150280 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 28 |
| Conread position: | 5-541 |
| Cow position: | chr6:68026522-68027068 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 26 |
| Conread position: | 5-586 |
| Cow position: | chr6:59741309-59740741 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 23 |
| Conread position: | 6-486 |
| Cow position: | chr6:13276543-13277017 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 26 |
| Conread position: | 6-525 |
| Cow position: | chr6:59919538-59919023 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 486, 24 |
| Conread position: | 7-483 |
| Cow position: | chr6:65880608-65881081 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 14-489 |
| Cow position: | chr6:33459612-33460083 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 14 |
| Conread position: | 15-532 |
| Cow position: | chr6:40554843-40554326 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 327, 18 |
| Conread position: | 18-504 |
| Cow position: | chr6:17598527-17598040 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 475, 15 |
| Conread position: | 19-593 |
| Cow position: | chr6:35420826-35420286 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 515, 11 |
| Conread position: | 21-452 |
| Cow position: | chr6:11277946-11277513 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 67 |
| Conread position: | 21-485 |
| Cow position: | chr6:16051642-16052096 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 21-532 |
| Cow position: | chr6:30478847-30479362 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 10 |
| Conread position: | 23-489 |
| Cow position: | chr6:13846803-13847252 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 65 |
| Conread position: | 23-503 |
| Cow position: | chr6:33388590-33389076 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 335, 64 |
| Conread position: | 28-263 |
| Cow position: | chr6:65900157-65899926 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 14, 30 |
| Conread position: | 28-393 |
| Cow position: | chr6:49520637-49520256 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 40 |
| Conread position: | 28-561 |
| Cow position: | chr6:7179917-7179401 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 409, 58 |
| Conread position: | 33-470 |
| Cow position: | chr6:28274750-28275183 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 64-483 |
| Cow position: | chr6:24238862-24239279 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 22 |
| Conread position: | 113-568 |
| Cow position: | chr6:32330947-32330496 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 237 |
| Conread position: | 116-593 |
| Cow position: | chr6:51190363-51190818 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 412, 8 |
| Conread position: | 118-480 |
| Cow position: | chr6:25214110-25214469 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 9 |
| Conread position: | 225-571 |
| Cow position: | chr6:25359463-25359813 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 203 |
| Conread position: | 225-806 |
| Cow position: | chr6:6476525-6475956 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 444, 82 |
| Conread position: | 344-614 |
| Cow position: | chr6:10641235-10641505 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 57 |
| Conread position: | 346-807 |
| Cow position: | chr6:43608281-43607825 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 325, 134 |
| Conread position: | 360-586 |
| Cow position: | chr6:52805122-52805342 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 77, 45 |
| Conread position: | 377-646 |
| Cow position: | chr6:14853365-14853113 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 35, 53 |
| Conread position: | 536-806 |
| Cow position: | chr6:42616395-42616660 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 107, 60 |
| Conread position: | 591-759 |
| Cow position: | chr6:35419833-35419664 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 82, 0 |
Show alignments to all cow chromosomes.