Cow genome map

Conread name: Spl1-SPL01C060046

Conread position: 1-160
Cow position: chr7:21241967-21241814 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 122
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 10, 0

Conread position: 1-203
Cow position: chr7:67426244-67426442 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 144
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 29, 0

Conread position: 1-325
Cow position: chr7:68436220-68435898 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 29

Conread position: 1-412
Cow position: chr7:6489483-6489086 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 305, 27

Conread position: 1-480
Cow position: chr7:54602676-54603152 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 1-482
Cow position: chr7:39791563-39792058 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 86

Conread position: 1-483
Cow position: chr7:8145412-8144940 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 252, 32

Conread position: 1-483
Cow position: chr7:10431599-10431114 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 90

Conread position: 1-483
Cow position: chr7:14139771-14139297 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-483
Cow position: chr7:21235186-21234708 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 432, 32

Conread position: 1-483
Cow position: chr7:24808642-24808163 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-483
Cow position: chr7:46902251-46901777 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 1-483
Cow position: chr7:64242114-64241644 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 24

Conread position: 1-486
Cow position: chr7:994060-994537 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 29

Conread position: 1-503
Cow position: chr7:5662201-5662697 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 32

Conread position: 1-503
Cow position: chr7:21975910-21975423 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 1-503
Cow position: chr7:41489944-41490433 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 1-503
Cow position: chr7:67416869-67417366 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 30

Conread position: 1-504
Cow position: chr7:52120255-52119760 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 28

Conread position: 1-522
Cow position: chr7:55538091-55537575 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 392
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 0

Conread position: 1-526
Cow position: chr7:1372824-1372305 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 24

Conread position: 1-575
Cow position: chr7:58378370-58377819 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 98

Conread position: 1-576
Cow position: chr7:102774-102189 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 315, 67

Conread position: 1-593
Cow position: chr7:39556262-39555682 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 530, 10

Conread position: 1-593
Cow position: chr7:55280973-55280390 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 27

Conread position: 1-593
Cow position: chr7:63020678-63021254 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 529, 29

Conread position: 1-598
Cow position: chr7:21310033-21310623 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 18

Conread position: 1-806
Cow position: chr7:51013795-51014559 (view UCSC Genome Browser custom track)
Alignm length: 809
Alignm identity: 606
Alignm E-value: 0
Alignm gaps (pig, cow): 257, 18

Conread position: 1-806
Cow position: chr7:53990567-53991360 (view UCSC Genome Browser custom track)
Alignm length: 821
Alignm identity: 582
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 29

Conread position: 2-483
Cow position: chr7:26893576-26894072 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 399, 31

Conread position: 2-483
Cow position: chr7:33406417-33405938 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 31

Conread position: 2-538
Cow position: chr7:446807-446274 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 19

Conread position: 2-806
Cow position: chr7:3154608-3155413 (view UCSC Genome Browser custom track)
Alignm length: 833
Alignm identity: 606
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 33

Conread position: 5-349
Cow position: chr7:47374826-47375168 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 5-431
Cow position: chr7:26025865-26026287 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 85

Conread position: 5-481
Cow position: chr7:1357836-1357384 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 5-484
Cow position: chr7:20555547-20556019 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 16

Conread position: 5-485
Cow position: chr7:7257037-7257499 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 28

Conread position: 5-489
Cow position: chr7:6643043-6642567 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 28

Conread position: 5-499
Cow position: chr7:30119708-30119236 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 319
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 309, 23

Conread position: 5-502
Cow position: chr7:21319985-21320479 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 5-502
Cow position: chr7:23816138-23815647 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 0

Conread position: 5-502
Cow position: chr7:61559042-61559536 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 5-504
Cow position: chr7:11466905-11466410 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 28

Conread position: 5-504
Cow position: chr7:27102281-27101789 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 28

Conread position: 5-539
Cow position: chr7:6648825-6648291 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 28

Conread position: 5-541
Cow position: chr7:3234854-3234317 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 262, 28

Conread position: 5-568
Cow position: chr7:20528845-20528286 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 26

Conread position: 6-173
Cow position: chr7:522014-521849 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 120
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 27, 0

Conread position: 8-504
Cow position: chr7:3301322-3300829 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 483, 25

Conread position: 10-593
Cow position: chr7:47050537-47051098 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 521, 20

Conread position: 14-483
Cow position: chr7:13537745-13537280 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 15-323
Cow position: chr7:68778526-68778231 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 72

Conread position: 15-514
Cow position: chr7:68907686-68908162 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 0

Conread position: 18-187
Cow position: chr7:24421676-24421841 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 15, 0

Conread position: 21-195
Cow position: chr7:29469706-29469881 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 133
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 31, 12

Conread position: 21-295
Cow position: chr7:545059-545327 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 0

Conread position: 21-503
Cow position: chr7:63385195-63385664 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 311, 13

Conread position: 21-616
Cow position: chr7:35287718-35287122 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 67

Conread position: 23-569
Cow position: chr7:27126012-27126547 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 325, 65

Conread position: 24-470
Cow position: chr7:27786471-27786912 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 0

Conread position: 25-571
Cow position: chr7:3729824-3730367 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 63

Conread position: 26-550
Cow position: chr7:68479016-68479540 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 465, 60

Conread position: 28-483
Cow position: chr7:21127806-21127359 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 0

Conread position: 31-563
Cow position: chr7:1611354-1610821 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 57

Conread position: 34-485
Cow position: chr7:20799582-20799140 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 0

Conread position: 38-419
Cow position: chr7:38536379-38536748 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 43-496
Cow position: chr7:1449350-1449800 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 44

Conread position: 44-340
Cow position: chr7:27144194-27144487 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 45-790
Cow position: chr7:29370711-29369989 (view UCSC Genome Browser custom track)
Alignm length: 748
Alignm identity: 525
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 41

Conread position: 51-564
Cow position: chr7:67484149-67484655 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 37

Conread position: 56-483
Cow position: chr7:34148972-34149402 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 209, 14

Conread position: 74-503
Cow position: chr7:35297374-35296944 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 386, 12

Conread position: 93-694
Cow position: chr7:68778231-68777650 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 96

Conread position: 113-573
Cow position: chr7:27540422-27539971 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 8

Conread position: 132-500
Cow position: chr7:27585141-27584789 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 249
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 227, 20

Conread position: 132-573
Cow position: chr7:58993153-58993584 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 399, 174

Conread position: 143-473
Cow position: chr7:33878400-33878077 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 0

Conread position: 154-540
Cow position: chr7:68858134-68857751 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 45

Conread position: 167-806
Cow position: chr7:39108239-39107627 (view UCSC Genome Browser custom track)
Alignm length: 645
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 341, 38

Conread position: 189-612
Cow position: chr7:68478455-68478876 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 46

Conread position: 224-586
Cow position: chr7:52804667-52804314 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 13

Conread position: 234-790
Cow position: chr7:29470179-29470725 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 437, 119

Conread position: 273-563
Cow position: chr7:68232035-68232328 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 252, 82

Conread position: 278-665
Cow position: chr7:24934864-24934485 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 0

Conread position: 282-573
Cow position: chr7:49290764-49291056 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 248, 0

Conread position: 358-523
Cow position: chr7:27147429-27147594 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 128
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 139, 14

Conread position: 365-699
Cow position: chr7:54196071-54195748 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 234

Conread position: 373-568
Cow position: chr7:1735332-1735130 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 142
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 123, 0

Conread position: 421-593
Cow position: chr7:6489096-6488923 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 132
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 110, 0

Conread position: 621-805
Cow position: chr7:68908428-68908612 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 132
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 51, 148

Conread position: 630-806
Cow position: chr7:4415487-4415665 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 129
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 42, 0

Show alignments to all cow chromosomes.