Cow genome map
| Conread name: | Spl1-SPL01C060046 |
| Conread position: | 1-193 |
| Cow position: | chr9:32968407-32968596 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1-205 |
| Cow position: | chr9:51183043-51182835 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 79, 19 |
| Conread position: | 1-243 |
| Cow position: | chr9:13219986-13220229 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 27 |
| Conread position: | 1-251 |
| Cow position: | chr9:22650820-22651057 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 84, 24 |
| Conread position: | 1-310 |
| Cow position: | chr9:7002219-7002524 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-365 |
| Cow position: | chr9:2199775-2200132 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1-414 |
| Cow position: | chr9:29028564-29028151 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 386, 32 |
| Conread position: | 1-450 |
| Cow position: | chr9:2052115-2052558 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 29 |
| Conread position: | 1-476 |
| Cow position: | chr9:792845-792377 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 424, 12 |
| Conread position: | 1-482 |
| Cow position: | chr9:37971542-37971068 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-482 |
| Cow position: | chr9:42309348-42309825 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-483 |
| Cow position: | chr9:3567188-3566709 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 254, 32 |
| Conread position: | 1-483 |
| Cow position: | chr9:4532156-4532634 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 87 |
| Conread position: | 1-483 |
| Cow position: | chr9:9012775-9013250 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 32 |
| Conread position: | 1-483 |
| Cow position: | chr9:29629082-29628604 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-483 |
| Cow position: | chr9:31807205-31807676 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1-483 |
| Cow position: | chr9:47001871-47002332 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-483 |
| Cow position: | chr9:59174492-59174017 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-483 |
| Cow position: | chr9:60278357-60277879 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1-485 |
| Cow position: | chr9:42568538-42569016 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 24 |
| Conread position: | 1-490 |
| Cow position: | chr9:3548505-3548023 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 24 |
| Conread position: | 1-503 |
| Cow position: | chr9:2170722-2171220 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 22 |
| Conread position: | 1-503 |
| Cow position: | chr9:28626365-28625878 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 235, 29 |
| Conread position: | 1-503 |
| Cow position: | chr9:37129869-37129382 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 18 |
| Conread position: | 1-503 |
| Cow position: | chr9:59443520-59444013 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 420, 25 |
| Conread position: | 1-522 |
| Cow position: | chr9:59535763-59536279 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 255, 32 |
| Conread position: | 1-563 |
| Cow position: | chr9:15072181-15072748 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 496, 29 |
| Conread position: | 2-293 |
| Cow position: | chr9:8969257-8968968 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 21 |
| Conread position: | 2-510 |
| Cow position: | chr9:2500629-2500124 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 31 |
| Conread position: | 2-510 |
| Cow position: | chr9:12845872-12845381 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 28 |
| Conread position: | 5-398 |
| Cow position: | chr9:46626130-46625741 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 5-431 |
| Cow position: | chr9:4672276-4672698 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 5-438 |
| Cow position: | chr9:222877-222449 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 16 |
| Conread position: | 5-446 |
| Cow position: | chr9:1252298-1251869 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 5-489 |
| Cow position: | chr9:781133-780655 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 26 |
| Conread position: | 5-502 |
| Cow position: | chr9:163821-163341 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 5-502 |
| Cow position: | chr9:1996251-1995752 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 88 |
| Conread position: | 5-503 |
| Cow position: | chr9:25483542-25484038 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 486, 28 |
| Conread position: | 5-503 |
| Cow position: | chr9:30672039-30672531 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 28 |
| Conread position: | 5-504 |
| Cow position: | chr9:28677643-28678141 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 28 |
| Conread position: | 5-504 |
| Cow position: | chr9:36724170-36724668 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 28 |
| Conread position: | 5-525 |
| Cow position: | chr9:3155701-3156208 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 5-587 |
| Cow position: | chr9:6111305-6110749 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 467, 23 |
| Conread position: | 6-496 |
| Cow position: | chr9:16268030-16268528 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 25 |
| Conread position: | 6-503 |
| Cow position: | chr9:2185633-2186129 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 326, 27 |
| Conread position: | 6-504 |
| Cow position: | chr9:17064728-17064215 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 305, 27 |
| Conread position: | 6-525 |
| Cow position: | chr9:3542480-3542994 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 473, 27 |
| Conread position: | 6-587 |
| Cow position: | chr9:64118499-64119066 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 96 |
| Conread position: | 7-593 |
| Cow position: | chr9:3356302-3355744 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 20 |
| Conread position: | 8-210 |
| Cow position: | chr9:1294143-1293944 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 8-289 |
| Cow position: | chr9:20310059-20309788 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 13-223 |
| Cow position: | chr9:2697254-2697047 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 14-503 |
| Cow position: | chr9:10315045-10315530 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 16 |
| Conread position: | 14-503 |
| Cow position: | chr9:37064119-37063640 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 69 |
| Conread position: | 15-483 |
| Cow position: | chr9:16175446-16175910 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 17-563 |
| Cow position: | chr9:31020489-31021051 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 71 |
| Conread position: | 18-503 |
| Cow position: | chr9:45873031-45873514 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 473, 15 |
| Conread position: | 18-571 |
| Cow position: | chr9:35657645-35658174 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 21-483 |
| Cow position: | chr9:6051362-6050905 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 246, 31 |
| Conread position: | 21-489 |
| Cow position: | chr9:25755521-25755074 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 35-541 |
| Cow position: | chr9:30826378-30826887 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 53 |
| Conread position: | 45-501 |
| Cow position: | chr9:3006537-3006084 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 47-563 |
| Cow position: | chr9:3586064-3586598 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 36 |
| Conread position: | 57-554 |
| Cow position: | chr9:26002411-26001937 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 320 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 116, 31 |
| Conread position: | 64-501 |
| Cow position: | chr9:34992110-34992554 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 22 |
| Conread position: | 79-541 |
| Cow position: | chr9:50789419-50789882 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 412, 8 |
| Conread position: | 81-579 |
| Cow position: | chr9:3578727-3578268 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 330 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 492, 26 |
| Conread position: | 92-806 |
| Cow position: | chr9:13477457-13476758 (view UCSC Genome Browser custom track) |
| Alignm length: | 725 |
| Alignm identity: | 505 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 142 |
| Conread position: | 136-600 |
| Cow position: | chr9:2001605-2001176 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 152-528 |
| Cow position: | chr9:18836823-18837198 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 144 |
| Conread position: | 194-502 |
| Cow position: | chr9:1979832-1980141 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 158 |
| Conread position: | 229-562 |
| Cow position: | chr9:1635444-1635763 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 230 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 262-585 |
| Cow position: | chr9:39040497-39040815 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 236 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 22, 34 |
| Conread position: | 276-571 |
| Cow position: | chr9:37095132-37095421 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 209 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 294-805 |
| Cow position: | chr9:44817814-44818318 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 243, 54 |
| Conread position: | 302-593 |
| Cow position: | chr9:20309568-20309282 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 320-503 |
| Cow position: | chr9:8968968-8968794 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 327-571 |
| Cow position: | chr9:3937833-3937591 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 201, 21 |
| Conread position: | 365-578 |
| Cow position: | chr9:3803067-3803280 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 165 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 413-593 |
| Cow position: | chr9:13222406-13222581 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 121, 82 |
| Conread position: | 454-676 |
| Cow position: | chr9:44794577-44794796 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 171 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 191, 39 |
| Conread position: | 464-614 |
| Cow position: | chr9:34720761-34720906 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 82, 90 |
| Conread position: | 591-806 |
| Cow position: | chr9:28688013-28688227 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 82, 17 |
| Conread position: | 621-806 |
| Cow position: | chr9:3803278-3803475 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 624-806 |
| Cow position: | chr9:34721422-34721604 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 47, 67 |
| Conread position: | 661-797 |
| Cow position: | chr9:44795057-44795196 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 51, 0 |
Show alignments to all cow chromosomes.