Cow genome map
| Conread name: | Ss1.1-Bra1-PBL_15_E02.5 |
| Conread position: | 75-376 |
| Cow position: | chr10:26930633-26930945 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 41, 15 |
| Conread position: | 75-395 |
| Cow position: | chr10:29798568-29798248 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 214 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 39, 102 |
| Conread position: | 76-394 |
| Cow position: | chr10:29773536-29773205 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 227 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 14, 92 |
| Conread position: | 77-386 |
| Cow position: | chr10:10202998-10203311 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 13, 101 |
| Conread position: | 77-394 |
| Cow position: | chr10:8107367-8107709 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 246 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 39, 95 |
| Conread position: | 78-375 |
| Cow position: | chr10:53443291-53442986 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 36, 99 |
| Conread position: | 78-377 |
| Cow position: | chr10:44863881-44864186 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 259 |
| Conread position: | 79-259 |
| Cow position: | chr10:14649428-14649610 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 79-389 |
| Cow position: | chr10:48479166-48479478 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 215 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 46, 37 |
| Conread position: | 79-399 |
| Cow position: | chr10:9343863-9343538 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 48, 316 |
| Conread position: | 79-399 |
| Cow position: | chr10:52084228-52084539 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 119 |
| Conread position: | 80-376 |
| Cow position: | chr10:69941584-69941868 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 204 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 104, 42 |
| Conread position: | 81-294 |
| Cow position: | chr10:17841798-17841577 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 35, 152 |
| Conread position: | 81-298 |
| Cow position: | chr10:5031870-5032095 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 25, 93 |
| Conread position: | 81-334 |
| Cow position: | chr10:28076133-28076385 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 32, 79 |
| Conread position: | 81-336 |
| Cow position: | chr10:1610734-1610483 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 35, 139 |
| Conread position: | 81-342 |
| Cow position: | chr10:10957197-10957472 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 81-342 |
| Cow position: | chr10:57957507-57957774 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 196 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 10, 104 |
| Conread position: | 81-353 |
| Cow position: | chr10:5505592-5505870 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 12, 111 |
| Conread position: | 81-363 |
| Cow position: | chr10:36954146-36954433 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 82-394 |
| Cow position: | chr10:66172912-66173230 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 221 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 84-259 |
| Cow position: | chr10:13590471-13590296 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 33, 96 |
| Conread position: | 84-316 |
| Cow position: | chr10:64163311-64163068 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 21, 95 |
| Conread position: | 87-397 |
| Cow position: | chr10:39052944-39052637 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 27, 77 |
| Conread position: | 88-315 |
| Cow position: | chr10:40420174-40419946 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 28, 47 |
| Conread position: | 88-385 |
| Cow position: | chr10:48223568-48223868 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 98 |
| Conread position: | 94-354 |
| Cow position: | chr10:29291450-29291183 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 20, 83 |
| Conread position: | 94-401 |
| Cow position: | chr10:4880050-4879735 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 22, 101 |
| Conread position: | 94-401 |
| Cow position: | chr10:4885823-4885508 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 22, 101 |
| Conread position: | 95-393 |
| Cow position: | chr10:46451490-46451795 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 21, 96 |
| Conread position: | 108-374 |
| Cow position: | chr10:32783650-32783925 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 77, 14 |
| Conread position: | 109-422 |
| Cow position: | chr10:65263202-65262886 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 76, 13 |
| Conread position: | 112-355 |
| Cow position: | chr10:58230467-58230223 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 88, 145 |
| Conread position: | 112-373 |
| Cow position: | chr10:66081583-66081834 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 167, 28 |
| Conread position: | 112-389 |
| Cow position: | chr10:28449237-28448966 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 168, 10 |
| Conread position: | 112-397 |
| Cow position: | chr10:11635712-11635411 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 211 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 121, 26 |
| Conread position: | 124-361 |
| Cow position: | chr10:57773904-57773662 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 67, 49 |
| Conread position: | 125-395 |
| Cow position: | chr10:55065689-55065966 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 57, 40 |
| Conread position: | 136-390 |
| Cow position: | chr10:33219248-33219504 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 24, 39 |
| Conread position: | 158-363 |
| Cow position: | chr10:24631702-24631498 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 122, 81 |
| Conread position: | 187-410 |
| Cow position: | chr10:46241838-46242060 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 90, 28 |
| Conread position: | 235-385 |
| Cow position: | chr10:23872405-23872553 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 45, 56 |
| Conread position: | 248-393 |
| Cow position: | chr10:17165493-17165640 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 250-395 |
| Cow position: | chr10:13590022-13589873 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 33, 88 |
Show alignments to all cow chromosomes.