Cow genome map
| Conread name: | Ss1.1-Bra1-PBL_15_E02.5 |
| Conread position: | 65-331 |
| Cow position: | chr3:41316521-41316239 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 14, 272 |
| Conread position: | 68-357 |
| Cow position: | chr3:24646454-24646157 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 42, 109 |
| Conread position: | 72-385 |
| Cow position: | chr3:80138508-80138827 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 38, 18 |
| Conread position: | 75-353 |
| Cow position: | chr3:64184977-64184690 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 9, 40 |
| Conread position: | 77-355 |
| Cow position: | chr3:1750700-1750400 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 39, 12 |
| Conread position: | 79-305 |
| Cow position: | chr3:16867601-16867824 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 133, 39 |
| Conread position: | 79-341 |
| Cow position: | chr3:78171705-78171967 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 189 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 38, 61 |
| Conread position: | 79-385 |
| Cow position: | chr3:37288971-37289290 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 235 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 32, 241 |
| Conread position: | 79-394 |
| Cow position: | chr3:13259235-13259550 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 208 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 37, 81 |
| Conread position: | 81-296 |
| Cow position: | chr3:42137184-42136967 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 166 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 36, 103 |
| Conread position: | 81-364 |
| Cow position: | chr3:37106435-37106723 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 33, 79 |
| Conread position: | 81-375 |
| Cow position: | chr3:30788608-30788904 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 10, 25 |
| Conread position: | 81-389 |
| Cow position: | chr3:54779636-54779335 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 224 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 37, 135 |
| Conread position: | 82-367 |
| Cow position: | chr3:71514593-71514868 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 200 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 40, 50 |
| Conread position: | 82-402 |
| Cow position: | chr3:40658798-40659120 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 34 |
| Conread position: | 84-399 |
| Cow position: | chr3:34463925-34464255 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 244 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 26, 79 |
| Conread position: | 87-361 |
| Cow position: | chr3:19559692-19559974 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 27, 89 |
| Conread position: | 89-384 |
| Cow position: | chr3:26659086-26659378 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 219 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 29, 64 |
| Conread position: | 94-366 |
| Cow position: | chr3:6188813-6188535 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 23, 29 |
| Conread position: | 94-416 |
| Cow position: | chr3:35145035-35144715 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 7, 117 |
| Conread position: | 95-392 |
| Cow position: | chr3:31924379-31924675 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 22, 82 |
| Conread position: | 96-339 |
| Cow position: | chr3:6092347-6092602 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 97-357 |
| Cow position: | chr3:41157116-41157377 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 194 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 20, 74 |
| Conread position: | 101-339 |
| Cow position: | chr3:40853270-40853031 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 184 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 17, 60 |
| Conread position: | 109-365 |
| Cow position: | chr3:16169804-16170062 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 82, 60 |
| Conread position: | 112-274 |
| Cow position: | chr3:8852664-8852501 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 73, 10 |
| Conread position: | 112-390 |
| Cow position: | chr3:73813045-73812749 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 94, 34 |
| Conread position: | 116-399 |
| Cow position: | chr3:2054558-2054276 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 97, 23 |
| Conread position: | 121-407 |
| Cow position: | chr3:76931140-76931445 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 116, 208 |
| Conread position: | 124-394 |
| Cow position: | chr3:24846372-24846096 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 203 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 17, 51 |
| Conread position: | 132-381 |
| Cow position: | chr3:56565643-56565391 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 62, 41 |
| Conread position: | 135-397 |
| Cow position: | chr3:25803353-25803083 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 55, 38 |
| Conread position: | 141-357 |
| Cow position: | chr3:11790300-11790074 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 16, 82 |
| Conread position: | 158-395 |
| Cow position: | chr3:1350245-1350013 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 119, 16 |
| Conread position: | 159-399 |
| Cow position: | chr3:36182763-36183001 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 26, 14 |
| Conread position: | 188-390 |
| Cow position: | chr3:18855873-18855674 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 45, 33 |
| Conread position: | 213-398 |
| Cow position: | chr3:4504481-4504661 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 67, 128 |
| Conread position: | 223-406 |
| Cow position: | chr3:4555557-4555739 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 57, 138 |
| Conread position: | 224-403 |
| Cow position: | chr3:3283174-3283353 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 56, 15 |
| Conread position: | 235-373 |
| Cow position: | chr3:48498618-48498757 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 42, 0 |
Show alignments to all cow chromosomes.