Cow genome map
| Conread name: | Ss1.1-Bra1-PBL_15_E02.5 |
| Conread position: | 66-392 |
| Cow position: | chr6:6055054-6054728 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 241 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 50, 13 |
| Conread position: | 71-368 |
| Cow position: | chr6:55387624-55387322 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 7 |
| Conread position: | 76-401 |
| Cow position: | chr6:45923913-45923599 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 41, 47 |
| Conread position: | 78-395 |
| Cow position: | chr6:6124511-6124187 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 48 |
| Conread position: | 78-395 |
| Cow position: | chr6:22804079-22804392 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 220 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 92, 35 |
| Conread position: | 79-287 |
| Cow position: | chr6:31941949-31941729 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 79-394 |
| Cow position: | chr6:17739735-17740061 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 229 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 33, 166 |
| Conread position: | 79-395 |
| Cow position: | chr6:52188516-52188854 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 232 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 37, 98 |
| Conread position: | 80-390 |
| Cow position: | chr6:14936059-14935754 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 220 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 36, 112 |
| Conread position: | 80-394 |
| Cow position: | chr6:56091209-56090882 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 229 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 81-361 |
| Cow position: | chr6:12976898-12976604 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 42, 95 |
| Conread position: | 81-370 |
| Cow position: | chr6:20407192-20406890 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 34, 212 |
| Conread position: | 81-398 |
| Cow position: | chr6:2404478-2404812 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 220 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 29, 310 |
| Conread position: | 81-402 |
| Cow position: | chr6:19441149-19440828 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 35, 46 |
| Conread position: | 82-228 |
| Cow position: | chr6:69190482-69190336 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 36, 115 |
| Conread position: | 82-356 |
| Cow position: | chr6:27991958-27992229 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 195 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 102, 34 |
| Conread position: | 82-380 |
| Cow position: | chr6:36263895-36264186 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 40, 77 |
| Conread position: | 83-376 |
| Cow position: | chr6:15664928-15665224 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 96 |
| Conread position: | 83-395 |
| Cow position: | chr6:22193100-22193417 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 43, 35 |
| Conread position: | 87-399 |
| Cow position: | chr6:35120986-35121296 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 45 |
| Conread position: | 88-380 |
| Cow position: | chr6:19748228-19748540 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 94-387 |
| Cow position: | chr6:16236431-16236732 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 217 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 26, 147 |
| Conread position: | 95-361 |
| Cow position: | chr6:6164944-6164668 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 19, 86 |
| Conread position: | 100-390 |
| Cow position: | chr6:19144700-19144990 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 14, 59 |
| Conread position: | 101-340 |
| Cow position: | chr6:47215336-47215097 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 82, 15 |
| Conread position: | 103-395 |
| Cow position: | chr6:54924184-54924477 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 22, 103 |
| Conread position: | 105-349 |
| Cow position: | chr6:66360659-66360416 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 80, 15 |
| Conread position: | 110-299 |
| Cow position: | chr6:20813082-20813277 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 8, 53 |
| Conread position: | 118-391 |
| Cow position: | chr6:43764086-43763798 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 156 |
| Conread position: | 124-390 |
| Cow position: | chr6:30499392-30499121 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 70, 41 |
| Conread position: | 126-383 |
| Cow position: | chr6:38382797-38383061 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 94, 169 |
| Conread position: | 157-393 |
| Cow position: | chr6:46250454-46250694 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 34, 16 |
| Conread position: | 158-390 |
| Cow position: | chr6:17627274-17627514 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 54, 16 |
| Conread position: | 211-372 |
| Cow position: | chr6:64254859-64254704 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 66, 123 |
| Conread position: | 236-390 |
| Cow position: | chr6:8930953-8931108 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 44, 93 |
Show alignments to all cow chromosomes.