Cow genome map

Conread name: Ss1.1-Emb1-C0005182_F21.5

Conread position: 2-298
Cow position: chr10:13365850-13365558 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 34

Conread position: 2-324
Cow position: chr10:34685894-34686232 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 0

Conread position: 2-341
Cow position: chr10:29696237-29696586 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 174

Conread position: 2-347
Cow position: chr10:25498352-25498716 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 0

Conread position: 3-214
Cow position: chr10:276595-276817 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 164
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 28, 157

Conread position: 3-286
Cow position: chr10:57989962-57989693 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 203
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 48, 0

Conread position: 3-324
Cow position: chr10:62216608-62216945 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 3-325
Cow position: chr10:4192216-4191883 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 81

Conread position: 3-325
Cow position: chr10:25565244-25564915 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 3-349
Cow position: chr10:32578304-32578657 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 100

Conread position: 3-414
Cow position: chr10:14859977-14860393 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 59

Conread position: 3-436
Cow position: chr10:44294845-44295283 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 294
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 28, 19

Conread position: 5-325
Cow position: chr10:41157470-41157790 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 31

Conread position: 11-325
Cow position: chr10:47906806-47907121 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 25

Conread position: 26-417
Cow position: chr10:31523831-31524229 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 39

Conread position: 33-362
Cow position: chr10:23431855-23432186 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 215
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 32, 19

Conread position: 33-480
Cow position: chr10:38546184-38545741 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 356

Conread position: 38-324
Cow position: chr10:40152401-40152116 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 13

Conread position: 50-421
Cow position: chr10:8328211-8327839 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 183

Conread position: 52-187
Cow position: chr10:39445075-39444939 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 101
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 26, 0

Conread position: 52-190
Cow position: chr10:54059289-54059152 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 106
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 22, 12

Conread position: 52-235
Cow position: chr10:28931960-28931777 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 143
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 22, 177

Conread position: 52-243
Cow position: chr10:55093307-55093496 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 151
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 38, 20

Conread position: 52-248
Cow position: chr10:29632796-29632601 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 158
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 31, 6

Conread position: 52-277
Cow position: chr10:39904992-39905232 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 175
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 24, 12

Conread position: 52-283
Cow position: chr10:38538432-38538196 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 52-288
Cow position: chr10:7282620-7282385 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 66

Conread position: 52-304
Cow position: chr10:124375-124628 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 52-309
Cow position: chr10:1375596-1375856 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 52-317
Cow position: chr10:21740686-21740420 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 64

Conread position: 52-317
Cow position: chr10:57559483-57559204 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 52-323
Cow position: chr10:19758416-19758687 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 111

Conread position: 52-324
Cow position: chr10:11685606-11685331 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 52-325
Cow position: chr10:14803901-14804179 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 13

Conread position: 52-325
Cow position: chr10:19496221-19495943 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 0

Conread position: 52-325
Cow position: chr10:21400606-21400328 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 52-325
Cow position: chr10:39179849-39180126 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 54

Conread position: 52-325
Cow position: chr10:41567172-41567445 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 90

Conread position: 52-325
Cow position: chr10:41876984-41877261 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 129

Conread position: 52-331
Cow position: chr10:37769888-37770168 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 66

Conread position: 52-333
Cow position: chr10:280555-280270 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 74

Conread position: 52-344
Cow position: chr10:39817297-39816999 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 8

Conread position: 52-347
Cow position: chr10:19511671-19511966 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 164

Conread position: 52-347
Cow position: chr10:32650798-32651094 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 259

Conread position: 52-361
Cow position: chr10:6260731-6260425 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 207
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 17, 21

Conread position: 52-385
Cow position: chr10:41389478-41389144 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 220
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 30, 45

Conread position: 52-386
Cow position: chr10:3543516-3543194 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 82

Conread position: 52-391
Cow position: chr10:184327-184676 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 235
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 24, 276

Conread position: 52-412
Cow position: chr10:49310570-49310913 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 34

Conread position: 52-414
Cow position: chr10:38847423-38847771 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 136

Conread position: 52-416
Cow position: chr10:24298789-24298428 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 200

Conread position: 52-416
Cow position: chr10:33346666-33347029 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 299, 0

Conread position: 52-421
Cow position: chr10:15862072-15861698 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 202

Conread position: 52-421
Cow position: chr10:46191427-46191788 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 300, 31

Conread position: 53-309
Cow position: chr10:51952552-51952299 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 159

Conread position: 53-414
Cow position: chr10:34318225-34317871 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 138

Conread position: 54-243
Cow position: chr10:19143271-19143081 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 151
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 20, 82

Conread position: 54-304
Cow position: chr10:22101299-22101548 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 158

Conread position: 54-304
Cow position: chr10:62408788-62408539 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 64

Conread position: 54-309
Cow position: chr10:2123195-2122939 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 54-309
Cow position: chr10:8290050-8290301 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 115

Conread position: 54-309
Cow position: chr10:16925603-16925858 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 184

Conread position: 54-309
Cow position: chr10:25359466-25359722 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 54-309
Cow position: chr10:38345295-38345039 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 54-309
Cow position: chr10:39041235-39040979 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 54-347
Cow position: chr10:21486981-21487276 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 258

Conread position: 60-324
Cow position: chr10:39853941-39853672 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 60-324
Cow position: chr10:62778420-62778686 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 60-410
Cow position: chr10:20371900-20371553 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 90

Conread position: 60-414
Cow position: chr10:10415474-10415814 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 68

Conread position: 61-301
Cow position: chr10:46694301-46694062 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 27

Conread position: 62-422
Cow position: chr10:41351685-41351325 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 258
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 22, 156

Conread position: 64-338
Cow position: chr10:50311983-50312253 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 184
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 11, 67

Conread position: 66-324
Cow position: chr10:16475842-16476095 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 177
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 13, 65

Conread position: 66-341
Cow position: chr10:38526983-38527257 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 188
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 17, 26

Conread position: 69-288
Cow position: chr10:10581881-10582105 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 170
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 122, 26

Conread position: 69-390
Cow position: chr10:38404431-38404117 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 226
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 95, 154

Conread position: 72-266
Cow position: chr10:24313748-24313556 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 137
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 153, 13

Conread position: 72-361
Cow position: chr10:11820419-11820705 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 200
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 75, 146

Conread position: 72-361
Cow position: chr10:24978050-24977768 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 207
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 58, 0

Conread position: 72-414
Cow position: chr10:63841388-63841733 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 242
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 52, 15

Conread position: 83-353
Cow position: chr10:14951975-14952236 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 192
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 25, 0

Conread position: 85-422
Cow position: chr10:31537365-31537692 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 222
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 312, 133

Conread position: 86-323
Cow position: chr10:10478041-10477798 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 0

Conread position: 93-480
Cow position: chr10:42628730-42629112 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 348, 0

Conread position: 109-323
Cow position: chr10:19802679-19802892 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 169
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 71, 53

Conread position: 111-321
Cow position: chr10:47157073-47157283 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 161
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 156, 183

Conread position: 111-388
Cow position: chr10:60192256-60192534 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 173

Conread position: 151-288
Cow position: chr10:29846486-29846349 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 110
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 158-414
Cow position: chr10:22842922-22843179 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 185
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 193, 13

Conread position: 168-306
Cow position: chr10:19497134-19496996 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 111
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 177-480
Cow position: chr10:54979280-54978979 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 123

Conread position: 188-323
Cow position: chr10:56064875-56065012 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 111
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 123, 0

Conread position: 206-311
Cow position: chr10:68599073-68598968 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 93
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 213-360
Cow position: chr10:42679600-42679748 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 113
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 101, 0

Conread position: 219-345
Cow position: chr10:24061573-24061445 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 99
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 94, 0

Conread position: 229-434
Cow position: chr10:28931570-28931363 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 154
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 109, 30

Conread position: 236-414
Cow position: chr10:60489844-60490022 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 153
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 44

Conread position: 258-480
Cow position: chr10:8339168-8339389 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 32

Show alignments to all cow chromosomes.