Cow genome map
| Conread name: | Ss1.1-Emb1-C0005182_F21.5 |
| Conread position: | 2-309 |
| Cow position: | chr17:20183417-20183099 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 142 |
| Conread position: | 4-347 |
| Cow position: | chr17:27345617-27345972 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 128 |
| Conread position: | 10-478 |
| Cow position: | chr17:15370887-15371352 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 40 |
| Conread position: | 11-317 |
| Cow position: | chr17:2261949-2262246 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 300, 25 |
| Conread position: | 11-325 |
| Cow position: | chr17:15143529-15143212 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 40 |
| Conread position: | 11-325 |
| Cow position: | chr17:43988375-43988688 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 25 |
| Conread position: | 13-325 |
| Cow position: | chr17:181203-181518 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 298, 59 |
| Conread position: | 18-323 |
| Cow position: | chr17:2248735-2248433 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 18 |
| Conread position: | 38-288 |
| Cow position: | chr17:16859691-16859454 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 190 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 36, 13 |
| Conread position: | 38-383 |
| Cow position: | chr17:2173744-2174097 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 13 |
| Conread position: | 38-421 |
| Cow position: | chr17:4081506-4081883 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 14 |
| Conread position: | 45-347 |
| Cow position: | chr17:2579495-2579788 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 217 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 35, 178 |
| Conread position: | 51-309 |
| Cow position: | chr17:14894037-14894288 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 84 |
| Conread position: | 52-199 |
| Cow position: | chr17:22160793-22160941 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 52-235 |
| Cow position: | chr17:24780925-24781109 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 52-294 |
| Cow position: | chr17:2556000-2556242 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 129 |
| Conread position: | 52-304 |
| Cow position: | chr17:6259722-6259974 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 186 |
| Conread position: | 52-304 |
| Cow position: | chr17:11087847-11087594 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 148 |
| Conread position: | 52-307 |
| Cow position: | chr17:9653579-9653323 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 52-309 |
| Cow position: | chr17:3642959-3642701 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 52-309 |
| Cow position: | chr17:18103803-18103550 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 200 |
| Conread position: | 52-309 |
| Cow position: | chr17:25737540-25737798 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 52-323 |
| Cow position: | chr17:6089284-6089010 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 52-323 |
| Cow position: | chr17:24633831-24634105 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 52-324 |
| Cow position: | chr17:4059979-4060249 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 117 |
| Conread position: | 52-324 |
| Cow position: | chr17:18185655-18185385 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 9 |
| Conread position: | 52-324 |
| Cow position: | chr17:22132110-22132378 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 6 |
| Conread position: | 52-324 |
| Cow position: | chr17:23857158-23856884 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 52-325 |
| Cow position: | chr17:2287263-2287537 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 52-325 |
| Cow position: | chr17:14217147-14216871 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 52-325 |
| Cow position: | chr17:15157086-15156809 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 122 |
| Conread position: | 52-325 |
| Cow position: | chr17:20665849-20665571 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 52-325 |
| Cow position: | chr17:23324577-23324299 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 52-344 |
| Cow position: | chr17:8208984-8209282 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 259, 0 |
| Conread position: | 52-344 |
| Cow position: | chr17:15435668-15435967 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 52-345 |
| Cow position: | chr17:1879969-1880267 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 91 |
| Conread position: | 52-347 |
| Cow position: | chr17:1946853-1947143 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 97 |
| Conread position: | 52-347 |
| Cow position: | chr17:35592090-35592390 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 295 |
| Conread position: | 52-348 |
| Cow position: | chr17:13929545-13929842 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 259 |
| Conread position: | 52-353 |
| Cow position: | chr17:1382937-1382631 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 295 |
| Conread position: | 52-360 |
| Cow position: | chr17:31199765-31199478 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 218 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 29, 78 |
| Conread position: | 52-361 |
| Cow position: | chr17:2147055-2147359 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 215 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 67, 13 |
| Conread position: | 52-413 |
| Cow position: | chr17:4295229-4295581 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 41 |
| Conread position: | 52-414 |
| Cow position: | chr17:20401552-20401898 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 97 |
| Conread position: | 53-317 |
| Cow position: | chr17:228425-228164 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 82 |
| Conread position: | 53-346 |
| Cow position: | chr17:2588191-2588476 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 210 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 269, 7 |
| Conread position: | 53-350 |
| Cow position: | chr17:152604-152300 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 171 |
| Conread position: | 53-413 |
| Cow position: | chr17:42264381-42264738 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 54 |
| Conread position: | 54-286 |
| Cow position: | chr17:40804695-40804928 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 54-309 |
| Cow position: | chr17:19269487-19269231 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 54-331 |
| Cow position: | chr17:13856890-13856612 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 261 |
| Conread position: | 54-347 |
| Cow position: | chr17:15850275-15850570 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 258 |
| Conread position: | 54-480 |
| Cow position: | chr17:14325624-14325208 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 137 |
| Conread position: | 60-309 |
| Cow position: | chr17:16890004-16890258 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 252 |
| Conread position: | 60-324 |
| Cow position: | chr17:18026872-18026607 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 60-324 |
| Cow position: | chr17:22429598-22429338 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 14, 95 |
| Conread position: | 60-346 |
| Cow position: | chr17:20087846-20087573 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 14, 32 |
| Conread position: | 60-353 |
| Cow position: | chr17:44853047-44852754 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 222 |
| Conread position: | 64-399 |
| Cow position: | chr17:6075681-6076013 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 11, 101 |
| Conread position: | 66-395 |
| Cow position: | chr17:1658684-1658343 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 7, 205 |
| Conread position: | 68-417 |
| Cow position: | chr17:6002121-6001778 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 12, 50 |
| Conread position: | 72-282 |
| Cow position: | chr17:249834-250047 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 98, 45 |
| Conread position: | 72-353 |
| Cow position: | chr17:16417936-16417659 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 32, 37 |
| Conread position: | 72-360 |
| Cow position: | chr17:18325095-18324811 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 85, 44 |
| Conread position: | 74-385 |
| Cow position: | chr17:40834647-40834946 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 207 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 117, 23 |
| Conread position: | 75-321 |
| Cow position: | chr17:602523-602291 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 186 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 93-271 |
| Cow position: | chr17:26205888-26205710 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 94-407 |
| Cow position: | chr17:3709284-3708975 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 246, 35 |
| Conread position: | 116-324 |
| Cow position: | chr17:1283763-1283555 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 162 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 137-303 |
| Cow position: | chr17:15323209-15323374 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 144-422 |
| Cow position: | chr17:18300819-18300564 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 193 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 219, 68 |
| Conread position: | 148-317 |
| Cow position: | chr17:43952589-43952419 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 6, 21 |
| Conread position: | 150-349 |
| Cow position: | chr17:31768063-31767858 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 159, 0 |
| Conread position: | 151-338 |
| Cow position: | chr17:22557599-22557786 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 51, 72 |
| Conread position: | 154-324 |
| Cow position: | chr17:14041065-14040896 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 30, 17 |
| Conread position: | 155-317 |
| Cow position: | chr17:34156109-34156272 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 156, 0 |
| Conread position: | 157-288 |
| Cow position: | chr17:36987688-36987557 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 185-295 |
| Cow position: | chr17:602694-602804 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 89 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 317-480 |
| Cow position: | chr17:36987552-36987395 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 89, 0 |
Show alignments to all cow chromosomes.