Cow genome map
| Conread name: | Ss1.1-Emb1-C0005182_F21.5 |
| Conread position: | 2-309 |
| Cow position: | chr20:24614518-24614839 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 9-480 |
| Cow position: | chr20:18315596-18315143 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 162 |
| Conread position: | 52-197 |
| Cow position: | chr20:11679064-11678918 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 52-216 |
| Cow position: | chr20:10841200-10841035 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 25, 133 |
| Conread position: | 52-288 |
| Cow position: | chr20:28160822-28161053 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 181 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 22, 83 |
| Conread position: | 52-307 |
| Cow position: | chr20:3270750-3271006 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 181 |
| Conread position: | 52-309 |
| Cow position: | chr20:13762948-13763208 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 52-322 |
| Cow position: | chr20:15064814-15065083 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 54 |
| Conread position: | 52-322 |
| Cow position: | chr20:25961149-25961421 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 111 |
| Conread position: | 52-323 |
| Cow position: | chr20:5560669-5560397 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 52-324 |
| Cow position: | chr20:3252088-3251816 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 168 |
| Conread position: | 52-325 |
| Cow position: | chr20:19437995-19438263 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 112 |
| Conread position: | 52-331 |
| Cow position: | chr20:7116423-7116142 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 52-344 |
| Cow position: | chr20:822813-823112 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 52-346 |
| Cow position: | chr20:13680011-13679717 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 78 |
| Conread position: | 52-347 |
| Cow position: | chr20:3684439-3684145 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 72 |
| Conread position: | 52-347 |
| Cow position: | chr20:5484235-5484534 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 294 |
| Conread position: | 52-347 |
| Cow position: | chr20:15292056-15292352 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 259 |
| Conread position: | 52-347 |
| Cow position: | chr20:29948545-29948841 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 287 |
| Conread position: | 52-360 |
| Cow position: | chr20:3033107-3033414 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 274 |
| Conread position: | 52-421 |
| Cow position: | chr20:31378838-31378471 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 247 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 22, 8 |
| Conread position: | 53-300 |
| Cow position: | chr20:20755402-20755153 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 32, 55 |
| Conread position: | 53-376 |
| Cow position: | chr20:9953938-9953617 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 116 |
| Conread position: | 53-422 |
| Cow position: | chr20:8993597-8993218 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 32 |
| Conread position: | 54-285 |
| Cow position: | chr20:35119622-35119850 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 54-288 |
| Cow position: | chr20:23469611-23469383 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 133 |
| Conread position: | 54-288 |
| Cow position: | chr20:23798930-23799168 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 222 |
| Conread position: | 54-304 |
| Cow position: | chr20:30684383-30684619 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 192 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 20, 130 |
| Conread position: | 54-309 |
| Cow position: | chr20:8004177-8003922 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 89 |
| Conread position: | 54-310 |
| Cow position: | chr20:21914375-21914632 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 200 |
| Conread position: | 54-347 |
| Cow position: | chr20:5534986-5535279 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 89 |
| Conread position: | 54-347 |
| Cow position: | chr20:12438713-12438419 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 142 |
| Conread position: | 54-347 |
| Cow position: | chr20:15097830-15097535 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 258 |
| Conread position: | 54-347 |
| Cow position: | chr20:25850943-25850650 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 257 |
| Conread position: | 54-347 |
| Cow position: | chr20:27869245-27869539 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 143 |
| Conread position: | 54-347 |
| Cow position: | chr20:28565548-28565254 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 257 |
| Conread position: | 55-423 |
| Cow position: | chr20:10856984-10856616 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 76 |
| Conread position: | 60-317 |
| Cow position: | chr20:8313386-8313127 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 30 |
| Conread position: | 61-418 |
| Cow position: | chr20:20905147-20904796 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 261, 84 |
| Conread position: | 72-260 |
| Cow position: | chr20:19367522-19367334 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 93, 125 |
| Conread position: | 72-319 |
| Cow position: | chr20:28476365-28476604 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 179 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 98, 76 |
| Conread position: | 72-407 |
| Cow position: | chr20:13434883-13434559 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 90, 14 |
| Conread position: | 75-276 |
| Cow position: | chr20:13665140-13664944 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 88, 54 |
| Conread position: | 75-326 |
| Cow position: | chr20:35104562-35104309 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 79-326 |
| Cow position: | chr20:28463551-28463796 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 187, 49 |
| Conread position: | 95-407 |
| Cow position: | chr20:22206626-22206938 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 22 |
| Conread position: | 109-345 |
| Cow position: | chr20:15947274-15947036 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 179 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 205, 92 |
| Conread position: | 111-324 |
| Cow position: | chr20:10846011-10845803 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 164 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 159-421 |
| Cow position: | chr20:22717588-22717323 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 12, 64 |
| Conread position: | 176-346 |
| Cow position: | chr20:21393764-21393936 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 176-393 |
| Cow position: | chr20:5465429-5465638 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 55, 22 |
| Conread position: | 193-324 |
| Cow position: | chr20:19495171-19495304 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 118, 0 |
Show alignments to all cow chromosomes.